MmuEX0053469 @ mm10
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr13:67494603-67516771:-
Coord C1 exon
chr13:67516671-67516771
Coord A exon
chr13:67509559-67509864
Coord C2 exon
chr13:67494603-67494729
Length
306 bp
Sequences
Splice sites
3' ss Seq
TCTGATTTCTTCTTATTCAGGGA
3' ss Score
9.14
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GAGAGAAACCTTTCAAATGGGAAGAATGTGGTGAGGTTTTCTATACCTGCTGAAGACTTACTAAACATCAGGAAATTCACATTGGCGAAAACCCTACAAAG
Seq A exon
GGAATCATCCTGTGTCCTGAGTTGTGGGAACTAAGGGAAGTTCAAGGAAGAGCATCCTAGACTTTCAGGATACTGTCACTCAGGCACAATTTCAGAATTAGACAAGAGTCAAGACACTAAGCAATGCAGATTAAGCCTTAAGAAGGTGAAGCTCACCCTAATGCTGGATCAAGAGTCAATACATTCAGCATTCTACCTCAAGACCAGTCAACCCCTACCATGGAGCCATGTGACTCTCTCTCTGAGAAAAGAACACAAGAGCACAGTTCCTTGTAGTGAACATTTAGCTTCCATTCTGAAAGCCAG
Seq C2 exon
GAAATGCTGTCATTCTGGGATGTGGCCATTGATTTTTCTCCAGAAGAGAGAGAATGCCTGGAGCCTGATCAGTGGGATCTGTACAGGGACGTGATGCTGGAGAATTACAGCCATCTGGATTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000097565-'3-4,'3-3,4-4
Average complexity
C2
Mappability confidence:
0%=0=0%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000167914fB4682
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTTTCAAATGGGAAGAATGTGG
R:
CCAGGAAATCCAGATGGCTGT
Band lengths:
222-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types