MmuEX0053470 @ mm9
Exon Skipping
Gene
ENSMUSG00000030443 | Zfp583
Description
zinc finger protein 583 [Source:MGI Symbol;Acc:MGI:2682297]
Coordinates
chr7:6277055-6280918:-
Coord C1 exon
chr7:6280857-6280918
Coord A exon
chr7:6279171-6279266
Coord C2 exon
chr7:6277055-6277181
Length
96 bp
Sequences
Splice sites
3' ss Seq
GCTTATGTGCATTACACCAGCAG
3' ss Score
2.02
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GACACCTCCCTGCTCCCAGAAACACAGCCATACATTCTTGAAGCTTTAACGCCATGTCCAAG
Seq A exon
CAGGGAAAGAATAGAGATTGCTGTTCCCAAAGGCAGAGTACCACCACAGTCAGGTCTCTGGTTGTGTTTAAAGTAGGTTTTATGAAGATTTATGAG
Seq C2 exon
AATTTGCTGACATTTGAGGATGTGTCTGTAAATTTCACTCAAGAGGAATGGCAGTGGCTGAGTGACACACAGAGAGATTTGTACAGGAAGGTGACATTGGAGAACTATAAGAGCCTGGTGTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030443-'3-5,'3-3,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.219 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCCAGAAACACAGCCATA
R:
CCAGTGACACCAGGCTCTTAT
Band lengths:
178-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: