MmuEX0053477 @ mm9
Exon Skipping
Gene
ENSMUSG00000030386 | Zfp606
Description
zinc finger protein 606 [Source:MGI Symbol;Acc:MGI:1914620]
Coordinates
chr7:13066284-13075045:+
Coord C1 exon
chr7:13066284-13066375
Coord A exon
chr7:13069386-13069529
Coord C2 exon
chr7:13074919-13075045
Length
144 bp
Sequences
Splice sites
3' ss Seq
TCTTGTATTGGTTTCTTAAGATC
3' ss Score
5.68
5' ss Seq
GAGGTACAC
5' ss Score
5.99
Exon sequences
Seq C1 exon
CTCTGTGTCCTCAGGATCCAGCATGGCACATGGAGGGAAGCGCTGAGGAGGACGGAAGAAAGACAGGTGGGCTCCCAGTAGCCCAAGTCGAG
Seq A exon
ATCCTCCTTAGCCTGGAACTTGCTATTGCGTTGGCATGGAACTCAGAAGAGATCTACTCTACTTCCCTCTGCCTCCCCGGTCCTGGGTCCAAGGCATTCGTCACCACAGCCAGCTAGAACTTCCCAATTAAGCAGGATTGTGAG
Seq C2 exon
GAACCAGTGACTTTCAAAGATGTGGCTGTGGCCTTTACCCAAGAAGAATGGGGACAGCTAGACCTTGTTCAGCGGACTCTGTACCGTGATGTGATGCTGGAGACCTATGGACACCTACTTTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030386-'7-9,'7-6,10-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.731 A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGTCCTCAGGATCCAGC
R:
CCACAGAAAGTAGGTGTCCATAGG
Band lengths:
218-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: