MmuEX0053499 @ mm10
Exon Skipping
Gene
ENSMUSG00000046311 | Zfp62
Description
zinc finger protein 62 [Source:MGI Symbol;Acc:MGI:99662]
Coordinates
chr11:49203292-49212776:+
Coord C1 exon
chr11:49203292-49203538
Coord A exon
chr11:49204451-49204475
Coord C2 exon
chr11:49212699-49212776
Length
25 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTACTGTTCTCAAAGGTT
3' ss Score
6.96
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GAATTGCAATAAAAGTCCAAGACAACTAGAACCCCCTTCCTCTCCGGGCAGACCAGCCGGGATTAGGAGGCCAGCAGAGCACCCACAAACTGCGGGTCACGTGCGCGATCAGAGCCCGACCATCGAGTCAGTCCTCCAGCTTCCCAGAGCGGCCTCGGAAGTGCCCCTGCGGCTCGGGTCTTTCCGGCCAGGCAGTCCGCGCTTTTGTCCCGCCGGCGGCCGGGCTCCCGCGGTGCCGCCACAGCCA
Seq A exon
GTTGTTCTGGGCCCTACCTTAAAAG
Seq C2 exon
TTGAAATGGAAGGTCTAAAATTGAAAAGTAAATGGATGGAAAATCTGATATATGTGGACATGGCAGAGTATAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046311_MULTIEX1-2/6=C1-3
Average complexity
S
Mappability confidence:
88%=100=88%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCGCGCTTTTGTCCC
R:
TCTATACTCTGCCATGTCCACA
Band lengths:
128-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types