MmuEX0053504 @ mm9
Exon Skipping
Gene
ENSMUSG00000074406 | Zfp628
Description
zinc finger protein 628 [Source:MGI Symbol;Acc:MGI:2665174]
Coordinates
chr7:4866819-4873605:+
Coord C1 exon
chr7:4866819-4867007
Coord A exon
chr7:4869012-4869118
Coord C2 exon
chr7:4870378-4873605
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTCTGATTCTCCACCTCCAGGTT
3' ss Score
9.33
5' ss Seq
GGGGTATGT
5' ss Score
7.48
Exon sequences
Seq C1 exon
GGTTTGTGTGCGCGAGAGGCCGCCGATAAAGGTTGAGTGCCTCGCGCCGGGGGCCGTGGGGAGGGAGCGCGCCCCCGCCCCCTCCCGGGCCGCGGGTCCCGCAGCGCTGTGCCGGGCCCCGCTTCCCGTCAGCCCCCGCGGGAAGGCCCTGGGGTTCTCCTTGATCCCCCTCCCCGACCGGGGCCACAG
Seq A exon
GTTTAGAAGGATCCAGCCCGAAGGCTAAGGTGGTCACAGAAGGGAGAGTCAGCCATCTGCAGCTAGGAGATATGCTTAAAGGAAAGACTCAGCAGCAAGGAGCTGGG
Seq C2 exon
GTGTGATGGCCGGCTCCCACGTGGACATGGCGCCAGCTTCCACCACCGAGGGAACTGGGGAAAAGCCAGGGCCCACTGCGCCAGCACCCACCCCAGCTGCTCAGTATGAGTGTGGGGAATGCGGCAAGTCCTTCAGGTGGTCATCTCGGCTCCTGCACCATCAGCGCACTCACACAGGTGAACGGCCCTATAAATGCCCGGACTGCCCCAAAGCCTTCAAGGGTTCCTCAGCCCTCCTCTACCACCAGCGGGGCCATACAGGCGAGCGGCCCTATCAGTGCCCAGACTGCCCCAAAGCCTTCAAGCGCTCTTCCTTGCTGCAGATCCACCGCAGTGTGCACACAGGCCTGCGGGCCTTCACCTGCGGCCAGTGTGGTCTGGCCTTCAAGTGGTCATCCCATTACCAATACCACTTGAGACAGCATACCGGTGAGCGGCCCTACCCGTGCCCTGACTGCCCCAAGGCCTTCAAGAACTCCTCCAGCTTGCGGCGCCACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074406_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=2.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTCCTTGATCCCCCTCCC
R:
GCAGTCCGGGCATTTATAGGG
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types