MmuEX0053505 @ mm9
Exon Skipping
Gene
ENSMUSG00000059689 | Zfp637
Description
zinc finger protein 637 [Source:MGI Symbol;Acc:MGI:2448537]
Coordinates
chr6:117792026-117794536:+
Coord C1 exon
chr6:117792026-117792132
Coord A exon
chr6:117792648-117792814
Coord C2 exon
chr6:117793271-117794536
Length
167 bp
Sequences
Splice sites
3' ss Seq
AACAAGACCTTCTTTGTTAGGTC
3' ss Score
4.33
5' ss Seq
ACAGTAGGC
5' ss Score
2.69
Exon sequences
Seq C1 exon
GTTCTTCCTTGACAATTTCCTGTTGTCAGTTGTCCTGCTATTAATCAGGGAGTCTGGAGACACAGCTGAGGCATGTTGGCTACTTCTTAGCAGGTAGAGGAGTTCAG
Seq A exon
GTCCTTGTAACTTGAGGGGAGCTGAAAAGGAAAGCTGGAGCTATTTCTTCCTAACACCAGTCAGGAAGGCTGGTGTGCTGACTTCTTGCCTGGAAAGTAGAGAACCCCAATTTTTTATCAAGACCAAATGCAAGCAGAGCGGCCCTTACCTGGGGACTAACAGTACA
Seq C2 exon
GTTCTCCAGACCAGCCCATGGAAGAATCATATGAAGAGGCGGTGATCAAAGTCAGCGAGCAGGAGTGGACATGTTTGGGTTCCCAACAGCTACCCTGCTGGACTGTCATGGAAGATACGCCCAGAATGTAGCCTTTTTCAGTGAGTGAGTCAGCTGGTTGCTGGGATGACGTCAGAGCCCCTATAAGAAGATGCATTCATTTGGTGAAGCTCACTGCTCTACAGGTTGCAGGGAAAGCCTGCAAGCTGGGATTGGAAATGATAATCAAAACAAAGCAAGAAAACAGTTTGAAGCCGGACAGTGGTGGTGCATGTCTTTAATCCCCGCACTTAGGAGGACGAGGCAGGCGGATCTGTGAGTTAGAGGCTAGCCTGGTCTGTAGAATGAGTTCTAGCACAGCCAAGGCTATATAGAGAAACCCTGTCTTAAGGGAGAAAGAAAGAAAAAAGGAAAAGCAATTTGATATAGAGGTGATGTTGGGGTTGTCTCAGGCTGAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059689-'3-2,'3-1,4-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTTGTCAGTTGTCCTGCT
R:
ACCAGCTGACTCACTCACTGA
Band lengths:
247-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: