MmuEX0053528 @ mm9
Exon Skipping
Gene
ENSMUSG00000054967 | Zfp647
Description
zinc finger protein 647 [Source:MGI Symbol;Acc:MGI:3052806]
Coordinates
chr15:76748399-76755878:-
Coord C1 exon
chr15:76755806-76755878
Coord A exon
chr15:76751546-76751630
Coord C2 exon
chr15:76748399-76748491
Length
85 bp
Sequences
Splice sites
3' ss Seq
ACTACCTGTCACTCTGACAGGCC
3' ss Score
8.26
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AGACGGGGCGGGACGGCCCCTTTGTCTTAGGGAGCCGAAGCTGCCGCCACAGGGCGAGAGGTTGCGGCAGATG
Seq A exon
GCCTCCAGGAGCCAGAGCTGCTCATTAGTGAAGGTCCATCTCTCAAGCACCTGAGGATGGAAATGTCACCCAAGTGAATGACGAG
Seq C2 exon
CCCCACAGGATCGCCTGATTTCTGTTGTCCTCGCAGTCTTGAGATACCAAGATGGCAGCAGCCGGGCTTCTACCGCTGCCAGCAGCACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054967_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGCCCCTTTGTCTTAGG
R:
GCTGGCAGCGGTAGAAGC
Band lengths:
145-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: