MmuEX0053529 @ mm10
Exon Skipping
Gene
ENSMUSG00000054967 | Zfp647
Description
zinc finger protein 647 [Source:MGI Symbol;Acc:MGI:3052806]
Coordinates
chr15:76917969-76925856:-
Coord C1 exon
chr15:76925376-76925856
Coord A exon
chr15:76920849-76921026
Coord C2 exon
chr15:76917969-76918061
Length
178 bp
Sequences
Splice sites
3' ss Seq
ACTGACATTGGATTTCGCAGTGT
3' ss Score
4.95
5' ss Seq
GGGGTAGTG
5' ss Score
-0.94
Exon sequences
Seq C1 exon
AGCCCGAGTCAGCCTGATGGGTCTCGAGACCAGTGGTCCAGGCTGCCTGGCCACCAGGGAAATCGCTAGAGGGCAAGCACAGATCTTGGCGGAAGTGACCGAAGGCCCTCGGGAGAAGAGGGGCGGCAGGGAGGGGGCGAGGCCGGGAGGCACTCGGATTTGTAGGGACTGCGGCCGCCGCTTCCGCTACAGCCTCAAAGAGCAGGCGCGGTCCGGGTCAGCACGCGGTCTCTCTAGGCACAGCGGAGGCCTACGCTCTCGGTGGCCCCGGGGCGCAGGGCATCAAGTCCTGCAAGAAGAGCTGGAGGCGGACGGCCATCCGATCCTCCCGCGTCCCGGTCCGGGACTTGGGGTGGGGGTTGGGGGTGGGGACCTAGGGGCGGGGTCCCCTGAGATTGACGACTGCGCAGACGGGGCGGGACGGCCCCTTTGTCTTAGGGAGCCGAAGCTGCCGCCACAGGGCGAGAGGTTGCGGCAGATG
Seq A exon
TGTGGAGAGCAAAGGAATTCCTGTCAAGGATTGCTCCAGGGTCCAGTGGAGGTGACATCCTGTGAACACATCTCCTAGAAAGCAGAAGGGGTGAAGACCACATGGGGTGAATCTGCTTCCATGGAAAAGGGTGACTGAGGAACCAAAAAGGCTGACCTAGCAGCTGCAGAGGACTGGG
Seq C2 exon
CCCCACAGGATCGCCTGATTTCTGTTGTCCTCGCAGTCTTGAGATACCAAGATGGCAGCAGCCGGGCTTCTACCGCTGCCAGCAGCACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054967_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCATCAAGTCCTGCAAGAA
R:
CAAGACTGCGAGGACAACAGA
Band lengths:
245-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types