MmuEX0053544 @ mm10
Exon Skipping
Gene
ENSMUSG00000054893 | Zfp667
Description
zinc finger protein 667 [Source:MGI Symbol;Acc:MGI:2442757]
Coordinates
chr7:6286579-6289437:+
Coord C1 exon
chr7:6286579-6286654
Coord A exon
chr7:6287870-6287970
Coord C2 exon
chr7:6289358-6289437
Length
101 bp
Sequences
Splice sites
3' ss Seq
CAGACTCCTTTTATCCCTAGGCA
3' ss Score
8.63
5' ss Seq
AAGGTAGCT
5' ss Score
6.77
Exon sequences
Seq C1 exon
GAGTGCGCAGGCGCGGGAGCTCTGTTGCTAGCAGTTCTGTGGCAGCTGTGAGACGGAGGACGCAGCAGGGAGACAG
Seq A exon
GCAAGCAACCTGGCTTCTTGGTGTCTGCCCAAGAATGGTCCTGCGGGAAAGTTGCATCCTACCCTGACCTGTGGAACCTGTTGGGTGTCTTCCTTATCAAG
Seq C2 exon
CACTCTGCCTCAGTCTGAATGTGGACCATCAGCAGCGGGAGGAAAGGATGCCTGCAGTCCGCGGGAAATCAAAATCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054893_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.403
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTCTGTTGCTAGCAGTT
R:
TGGATTTTGATTTCCCGCGGA
Band lengths:
139-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types