MmuEX0053587 @ mm10
Exon Skipping
Gene
ENSMUSG00000060630 | Zfp735
Description
zinc finger protein 735 [Source:MGI Symbol;Acc:MGI:1923640]
Coordinates
chr11:73688778-73690376:+
Coord C1 exon
chr11:73688778-73688971
Coord A exon
chr11:73689692-73689818
Coord C2 exon
chr11:73690281-73690376
Length
127 bp
Sequences
Splice sites
3' ss Seq
AGTGTGAACTTCAATTTCAGGGT
3' ss Score
7.41
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
ATCATTCCTGCATCTGTTCCCTGGAGAAGGCTTGTTAGAGATTCGATTCCTGCTTTCCACTCCTCAGTTTTACCAGGGACAGGGAGGACCTGCTGCCTCTGAATAAAGAGTGGGTTCTGGGAAGTAAAATTTTAGTATAAGCTTTTGTGAAACATTCCATTCTGAAGGAAGAAGCAGAGATGTGTGCTTCACAG
Seq A exon
GGTGTATTGACATTCATGGATGTGGCTATAGAGTTCTCTAAGGAAGAGTGGGAATGTCTGGATTCTGCCAAGAGGGCTTTGTACAGAGATGTCATGTTGGAAAATTACATCAACCTGGTTTCTGTGG
Seq C2 exon
GTGTTGCTGTTTCAAAACAAGAGGTAATCATCTGTCTTGAACAAAACAAAGAACCATGGATTGTTGATGGAGAGAAGACAGAAGTAAGAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060630_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTTCCCTGGAGAAGGCTT
R:
TCTCTCCATCAACAATCCATGGT
Band lengths:
257-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types