MmuEX0053609 @ mm9
Exon Skipping
Gene
ENSMUSG00000055150 | Zfp78
Description
zinc finger protein 78 [Source:MGI Symbol;Acc:MGI:107783]
Coordinates
chr7:6315803-6324103:+
Coord C1 exon
chr7:6315803-6316054
Coord A exon
chr7:6323666-6323812
Coord C2 exon
chr7:6324013-6324103
Length
147 bp
Sequences
Splice sites
3' ss Seq
CTACCTCCTCTACCATATAGTTC
3' ss Score
5.66
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
CCTATCTAAGCCCAGCCCCTCACATCAAACTTCTGAGACCCTTGCTCTTCTCTGCTTAGCTTTGCCTTCACCCTCAGTCTAAGAAACTGTTCTCCGTAGTACCCGCTTCTCATCGCAGACTTCGCTGAGTACACGCCCCTTCAGCCCCACCTTTCTCAGATTAAGCTCTTAGGTCGTCGCTGGCAGAGGCTGCGCTTGCGCACACATAGCTTGTAGGAAACCTCCCAGCGTTCCTCGGTTGACAGCGTCTGG
Seq A exon
TTCCCTAATCCCTGAGAGGATGGGTTGGAGGAAGACATCCCATTTAGGACTGCGTGTTCCAAGATCTCTCGCTCTGTGTACACTGTCCAGGAGCTTGTCTTTGTGTCAGTTCTCATCTCCTGCCAGAGGACGCTTCTTTGATAATGG
Seq C2 exon
GTTGGACTTCCCAGGATACAGTTGTTCTCCAAGAGAGAAGCCAGGAGGAGGATAAGACATGACAGTTGAACTAATGAAAGCCATGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055150_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTAGCTTTGCCTTCACCCT
R:
CCTCCTGGCTTCTCTCTTGGA
Band lengths:
247-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: