MmuEX0053627 @ mm9
Exon Skipping
Gene
ENSMUSG00000003929 | Zfp81
Description
zinc finger protein 81 [Source:MGI Symbol;Acc:MGI:1890752]
Coordinates
chr17:33473667-33495823:-
Coord C1 exon
chr17:33495679-33495823
Coord A exon
chr17:33475046-33475196
Coord C2 exon
chr17:33473667-33473793
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCTTCCTTATAAGGCA
3' ss Score
8.12
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
Exon sequences
Seq C1 exon
AGTCAGAGGGTGCCGCCATTGCCGCCCTGTTTGAGTCCTGTGTAGCTCCAGGGAGGCAGGTGGTGACTTGGCCTGAGTCGCTGTCCCTTCTGCTGATTGTAGGCCCTTTAGGAAGCACACTGCTCGCGTGTGAAATCAGGAAATG
Seq A exon
GCATTAAGCTCATTTAGTACATCCCATATGTGCGTGCACTGGTATGGTACCATCCACTGGAGCATAGGAAACTACCAGTGGCCACACCCTAAAAGAAGAATGCTTCTCCATCCTCCAGCAGCTACCCACTGCCAGCAACTCCTTAGTGAAG
Seq C2 exon
GAACCAGTGACCTTTGAGGATGTGGCTGTGAACTTCACCTTAGGAGAGTGGGCTTTGTTGGATTCTTATCAAAAGGAGCTCTACAGAGATGTGATGAAGGAAACCTTTAGCAACCTGATCTCCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003929_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGTTTGAGTCCTGTGTA
R:
TGGAGATCAGGTTGCTAAAGGT
Band lengths:
246-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: