MmuEX0053631 @ mm9
Exon Skipping
Gene
ENSMUSG00000066829 | Zfp810
Description
zinc finger protein 810 [Source:MGI Symbol;Acc:MGI:2384563]
Coordinates
chr9:22082669-22087704:-
Coord C1 exon
chr9:22087612-22087704
Coord A exon
chr9:22084897-22085003
Coord C2 exon
chr9:22082669-22083724
Length
107 bp
Sequences
Splice sites
3' ss Seq
GAAAATTTAAATATTTTCAGGTG
3' ss Score
6.23
5' ss Seq
GAAGTAGGT
5' ss Score
6.22
Exon sequences
Seq C1 exon
GGCACTGCATGGCCAAACCTGAGCTGATTTTCAACTTAGAACAGGGACTCGGGCCACGGAGCACAGCAGGAGCCTCAGTCTGGAACCTCTCAG
Seq A exon
GTGTCAACAAAGTGAGTAGCCTGGTTGATACCATCCAGGAAAATGATAGCAGACATTTCTGGCAAATTGAAATCAACAGCCATACAGCAAATGAAGAACTGGTTGAA
Seq C2 exon
GCAGAACTGAAGATTCATGAGGAAATCCACCGAGGGGCCAAATCCTATGAATGTGAAGTGTGTTTGGAAGCATTTTACCTGAAGCCACAGTATAGCACAAAGCAGAGCTATCACACATGCGAGAATCCATGTGACTGTAAGAAGTGTAGAGAAGCTTTCTATCCTAAGTCTACCCTCAGTCAGTATCAGAGGCTTGAGAGAGGTGAGAAACCCCATGCGTGCTTAGAGTGTGGGAAATCCTTCTACTGCAAGTCTCACCTCACTGTGCATCAGAGGACCCACACCGGTGAGAAGCCTTATGACTGTAAAGAGTGCAGGAAGGCTTTCTACAGCAAATCCCAGCTCAATGTGCATCTGAGAATTCACACCGGTGAGAAGCCTTATGAATGTAAAGACTGCAGGAAGGCTTTCTACCGCAATTCTGACCTCACTGTACATCAGAGAACTCATACAGGTGAGAAGCCCTATGAATGTAAAGTCTGCAGGAAAGCTTTCTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066829_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.028
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.4),PF079757=C1_4=WD(100=15.3),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.1),PF079757=C1_4=WD(100=13.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTCAGTCTGGAACCTCTC
R:
CTAAGCACGCATGGGGTTTCT
Band lengths:
249-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types