MmuEX0053639 @ mm9
Exon Skipping
Gene
ENSMUSG00000069743 | Zfp820
Description
zinc finger protein 820 [Source:MGI Symbol;Acc:MGI:1922674]
Coordinates
chr17:21960811-21982726:-
Coord C1 exon
chr17:21982611-21982726
Coord A exon
chr17:21977591-21977681
Coord C2 exon
chr17:21960811-21960858
Length
91 bp
Sequences
Splice sites
3' ss Seq
TATCTCTTTCTTATATGCAGGTC
3' ss Score
9.73
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
GCTCTCTGGCCCTGGAAAAGTCTCCTGAGAAGCAGTTCCTTTGCTACGGGCCGGGGGAGTCAGGATCAGCAGCGCAGCGGCGGGAACCGCGGTCCAGCGGACCTGGAACCTCCCAG
Seq A exon
GTCTCCCACTGCTCAGCGAGATCTGCTCACCTATGAGTCAGAACTAAGAGCCCCGGATGGTGAAGAGAGGAAACTGTAGCCAAGGAATTGG
Seq C2 exon
GTAAGAGTAACAAGAAGAATGAATGCTTCTCTCCTAAATGTTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069743-'0-3,'0-2,2-3
Average complexity
C2
Mappability confidence:
80%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTGGCCCTGGAAAAGTCT
R:
TGAGGAACATTTAGGAGAGAAGCA
Band lengths:
161-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: