MmuEX0053657 @ mm9
Exon Skipping
Gene
ENSMUSG00000058192 | Zfp846
Description
zinc finger protein 846 [Source:MGI Symbol;Acc:MGI:1924012]
Coordinates
chr9:20392953-20395328:+
Coord C1 exon
chr9:20392953-20393079
Coord A exon
chr9:20393901-20394002
Coord C2 exon
chr9:20395257-20395328
Length
102 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTGTTTTGAGACAGGAT
3' ss Score
3.77
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GTCTCAGTAACTTTTGATGATGTGGCTGTGGACTTCACCCAAGAAGAATGGATTTTATTGGATCAAGCTCACAGAGACCTCTACAGAGAGGTGATGCTGGAGAACTACCAGAACCTGGCCTCAGCAG
Seq A exon
GATCTCACTCTGTAGCCACAGCTGAACTGGAACTCATTGTATAAATCAAGCTCCCTGAATTCACAGAAATCTGCTTCCCATGTGCAAGTGCTGGGATTGAAG
Seq C2 exon
GATGTGAGGTCATCAAACCCAGTCTGATCTCCTGGTTGGAAGAAGAGGATTTGCACAGAGAAGATCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058192_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.080
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTAACTTTTGATGATGTGGCTG
R:
TGGAGATCTTCTCTGTGCAAATCC
Band lengths:
194-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: