MmuEX0053663 @ mm10
Exon Skipping
Gene
ENSMUSG00000074405 | Zfp865
Description
zinc finger protein 865 [Source:MGI Symbol;Acc:MGI:2442656]
Coordinates
chr7:5020376-5036768:+
Coord C1 exon
chr7:5020376-5020655
Coord A exon
chr7:5028991-5031279
Coord C2 exon
chr7:5032763-5036768
Length
2289 bp
Sequences
Splice sites
3' ss Seq
CCCCATCCTCTTCTTCACAGGGT
3' ss Score
9.5
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
Exon sequences
Seq C1 exon
GCATGCGCACTAGGCCCCGTTCGCCCACCGGAAGCAGCCTTGGCTGTTCCCCTCCCGTGTCTAGTGCCGGCGTAATTTCCCTTACCCGTTCCTCCGCCACCATCCTCCACGCCGGCGCTTGGGGGAACGGGCGCGACTTCCGCTTCCGGGCAGGAGGCGCGGGGCTGGTGGGGAGTTGAGGGGGAAGGGGCGGCACTTCCGGTTGGGCCCTCGGGTCTCCCCGGAGCGGCGGCACCTCCTCCGCCTCCTCAGCCTCCTCCCGGCGGAGACCCCAGCGCCG
Seq A exon
GGTCTCCCTTCTTTCCACCGACCAGAGATGGAGGCAAACCAGGCAGGCAGCGGTGCCGGGGGTGGCGGGAGCAGCGGCATCGGGGGCGAGGACGGGGTCCACTTCCAGAGTTACCCATTTGACTTCCTGGAATTCCTCAACCACCAGCGCTTTGAGCCCATGGAGCTATACGGGGAACACGCCAAGGCAGTGGCAGCCCTGCCCTGTACCCCGGGGCCCCCGCCCCAGCCCCCACCCCAGCCTCCTCCACCCCAATATGACTACCCACCCCAGTCCAGTTTCAAACCCAAGGCGGAGGCTCCTTCCTCATCTTCATCATCATCTTCATCATCATCTTCCTCATCTTCGTCTTCCTCATCCTCTTCCCAAGCCAAGAAGATGGATCCGCCTTTGCCACCCACCTTCGGGGCACCTCCCCCTCCACTCTTTGATGCTGCCTTCCCTGCTCCGCAATGGGGAATAGTCGACCTCTCTGGACACCAGCACCTGTTCGGGAACCTGAAACGTGGTGGGCCCACCCCTGGGCCTGGAGTAGCATCAGGACTGGGCACTCCCACTGGGACCCCAGGGCCACTTACCACACCCTCGCAGACCCCGCCTGGGCCCGCAGTAGGGGCAGCCTGCGACCCAACCAAGGACGACAAGGGCTATTTCCGAAGGCTGAAGTACCTGATGGAGCGACGCTTCCCGTGTGGTGTTTGCCAGAAGTCCTTCAAACAGTCCTCACATCTGGTCCAGCACATGTTAGTGCACTCCGGGGAACGACCATACGAATGCGGCATCTGTGGCCGCACCTACAACCATGTCTCCAGTCTCATCCGCCACCGACGCTGCCACAAGGATGTGCCACCAACACCAACTGGAGGTACGCCACAGCCTGGGCCCGCACTCCCTTCACTGGGCCTCCCGGTATCCACAGCCAGTGCCACAGCCAGCTCTGACCCCGCCGCAGTGTCCTCTGGCCCCTCAGCCACCCCTGCAACGCCTGCCACCTCCACTGATGGGAACACCACCCCTGCTGCCCCACCCGGGGTGGCCATGCCTCCCTCTGCCACTACTGGCGGTGATGGCCCATTTGCCTGCTCCCTCTGCTGGAAGGTCTTCAAGAAGCCTAGCCACCTCCACCAGCACCAGATCATCCACACGGGTGAGAAACCCTTCTCCTGCTCCGTGTGCAGCAAAAGCTTCAACCGGAGGGAGAGCCTCAAACGTCACGTGAAAACGCACTCGGCCGACTTGCTGCGCCTGCCCTGTGGCATCTGTGGCAAGGTCTTCCGCGATGCTTCCTACCTCCTCAAGCACCAGGCAGCCCACGCAGCGGCCGGGACTCCGCGGCCGGTGTACCCCTGCGACCTGTGCGGGAAAACATACTCCGCACCGCAGAGCCTGCTGCGACACAAGGCTGCCCACGCACCACCTGTGGCCACGGAGCCGGCAAAGGACGGGGCTGCCTCGGTCCCACAGCCACCACCTCCCTTCCCCCCAGGTCCTTACCTCCTGCCCGCGGACCCATCCACTACCGACGAGAAAGCCACAGCGGCCGCAGCGGCTGTGGTGTATGGTGCGGTGCCTGTCCCACTTCTCAGCGCGCATCCGCTGCTGCTCGGCGGTGCGGGGAATGGTGGTGCTGGAGGCCCGGGCGCAGGCGGCCCCAGCAAGACGTTCTGCTGTGGCATCTGTGGGCGCGCGTTTGGGCGCCGCGAGACCCTGAAGCGCCACGAGCGCATCCACACCGGCGAGAAGCCCCACCAGTGCCCGGTGTGCGGGAAGCGTTTCCGGGAGTCCTTCCATCTGAGCAAGCACCACGTGGTGCACACCCGAGAGCGGCCCTACAAGTGCGAGTTGTGCGGCAAGGTCTTCGGCTACCCGCAGAGCCTCACACGCCACCGCCAGGTGCATCGGCTCCAATTGCCCTGCGCCCTGGCCGGAGCCACAGGCCTCGCCACCGGCCAGGGGACCACTGGGGCCTGTGGACCCGGAGCTGCAGGCACTTCAGGTGGGCCGGCCGACCTGAGCTATGCCTGCTCAGACTGCGGGGAGCACTTCCCGGATCTCTTCCACGTCATGAGTCACAAGGAAGCTCACATGTCAGAGAAGCCGTATGGCTGTGACGCCTGCGGCAAGACGTTCGGTTTCATCGAGAACCTCATGTGGCACAAGCTGGTTCACCAGGCTGCCCCGGAGCGCCTTCTAGCGCCAACACCCAGTGGCCCCCAGTCTTCTGATGGCGGCAGCAGCGGCGGCGGCACCGATGCATCCAGCGTGCTGGACAACGGACTGGCCGGAGAG
Seq C2 exon
GTTGAGTGAGGATTTGCCATGTCCCAGGCATTAGCCTGAGTGAAACAGGGAAGTCGCCCTCTCAGGAACTGATTTGAGACCCCGAGACTCCCTTCCATGATGCTCTCAGCCACCATGGAAACACCGGAAGCCTTCTGTCTGCCAAGCCCTGACCTGGGCGCTAGGGAGACTGATGAATTGATCGGACATGACATTCACACTCCAGTAGGCTGGGAGAGCATACCTGAGGAACTTAACACAGTCTGCAGACTTACTGGAGACGGTCTCATGTAGTCTAGGCTAGCTATGGACTTGCTTTGTAGGTACAGATAGGCTTGATTTTCCCCCATTTTTGAGACATGGTCTCTCTATGTAACCCTTGGCTCTCCTGGAATTCTCTGTGGACTAGGCTGGTTTTGAATTTACAGAAATCCACCTGCCTCTCTGCCTCTCTGGTGCTGAGATTAAAGGTGTGCACCACCATAGCTGGCTAATCTTGAACTTTTTTTAAAATCTAGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074405-'8-6,'8-3,10-6=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.507 C2=0.500
Domain overlap (PFAM):
C1:
NA
A:
PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF0009621=zf-C2H2=WD(100=3.1),PF139121=zf-C2H2_6=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF139121=zf-C2H2_6=WD(100=3.4)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types