MmuEX0053681 @ mm10
Exon Skipping
Gene
ENSMUSG00000069206 | Zfp874a
Description
zinc finger protein 874a [Source:MGI Symbol;Acc:MGI:3040703]
Coordinates
chr13:67440433-67448916:-
Coord C1 exon
chr13:67448821-67448916
Coord A exon
chr13:67447364-67447432
Coord C2 exon
chr13:67440433-67443334
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTGTATATATTTTAGGTA
3' ss Score
10.48
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
GTCTTGCTGTTGCTAAACCATACTTGGTAACATTTCTGGAGCAAAACCAAGGATCTTCGGGTGTGAAAAGCCAAACATCAGCCACCATTCCTCCAG
Seq A exon
GTACATTTGATTCATAACATTTGTTGGCTCCATTTCTTCCCTGTTTTTGTCTGGATGACATGTCCATTG
Seq C2 exon
GAACAACAGGCAATGAATTTAACAATCACAATGAGGCCATTGATCACAGCTCTCTAAGTATGCAATGCCAGAGAATTCATACAGGAGAGGAACCCTACTACTTTGAAGACTGTGGTAAGGCCCTTAGTTCTCAGGCAACACTTTCTGTACTCCAGGGACATTTTATTGGCGACAAACCCTACAAGTGTAGAGAATGTCATAAAACTCTTAGTAGTCGCTCATCACTTTTAATACACCAGAAATATCACACTGATGAGAAAACCTACAAGTGTGAAAAATGTGGCAAAGGGTTTTTCCGTTCCTCAGATCTTCAGCATCATCAAAAAATTCATACTGGAGAGAAACCATACAAATGTGAAGAGTGTGACAAAGCCTTTCTTCATCACTCATATCTTAGGAAACACCAGGCAATTCATACTGGAGAGAAACCCTACAAGTGTGAAGAGTGTGGAAATTCATTTTACTATCCTGCAATGCTGAAGCAACATCAAAGAATTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069206_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.265 A=0.800 C2=0.032
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=6.7)
Main Inclusion Isoform:
ENSMUST00000075255fB4719
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCCAAACATCAGCCACCA
R:
GTTGCCTGAGAACTAAGGGCC
Band lengths:
169-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types