MmuEX0053691 @ mm9
Exon Skipping
Gene
ENSMUSG00000066613 | Zfp932
Description
zinc finger protein 932 [Source:MGI Symbol;Acc:MGI:1916754]
Coordinates
chr5:110425540-110436089:+
Coord C1 exon
chr5:110425540-110425652
Coord A exon
chr5:110432372-110432471
Coord C2 exon
chr5:110435963-110436089
Length
100 bp
Sequences
Splice sites
3' ss Seq
AATGTTTTCCCTCTCTTTAGGCT
3' ss Score
11.14
5' ss Seq
CCTGTAATT
5' ss Score
-2.06
Exon sequences
Seq C1 exon
CGGTTTCCCTTAGTAGCTGAGCAGGCTTGAATGGTCCCTTATGCTGTGCTCTCTGTCCTGCCGCTGGATGCTGTGGAGGGTGCTCAGGCAAGCTTGGAAGTTGTGACATGGTG
Seq A exon
GCTGCCTCTATGTCCATCTGACCGGGTTTTTGCCACTTCTAATCTACTTTCTGCTACTGGCAAAGAGGAGTAATAGAGTATACAGGATAAGTATTGCCCT
Seq C2 exon
GATGCATTGACCTATGATGATGTGTATGTGAACTTCACTCAAGAAGAATGGGCTTTGCTGAATCCTTCACAGAAGAGTCTCTACAAAGATGTGATGTTGGAGACCTACAGGAACCTCAATGCTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066613_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3),PF138841=Peptidase_S74=PU(55.6=58.1)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTTTCCCTTAGTAGCTGAGC
R:
CAGCATTGAGGTTCCTGTAGGT
Band lengths:
237-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: