MmuEX0053705 @ mm9
Exon Skipping
Gene
ENSMUSG00000071267 | Zfp942
Description
zinc finger protein 942 [Source:MGI Symbol;Acc:MGI:1920483]
Coordinates
chr17:22067333-22078817:-
Coord C1 exon
chr17:22078693-22078817
Coord A exon
chr17:22069960-22070080
Coord C2 exon
chr17:22067333-22067459
Length
121 bp
Sequences
Splice sites
3' ss Seq
CTGAGTTGTATTAATTTTAGCTT
3' ss Score
5.04
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
TGGAGCTTCCCTCAGATTGAACCAGAAATCCTTCTGTTACTCAGAAAATAGTCCTGACACTGTGACACCAGAGGGTATGCCTTTCCTGACTGATTGGAATTGTATCACATGGGATTTAAATCTGG
Seq A exon
CTTTTAATTTTGGAAACCTTGATGTGAAATTTCAATAAGACTTCCAGTTTAAATTCCTGAGATAGAAACTTGGAGAAGAACAATAAGAAGAATGAATGCTTCCCTGGTAAATGCTCCCAAG
Seq C2 exon
GGTCTGTTAAGATTCAAGGATGTGGCAGTGGACTTCTCACAGGAGGAATGGGAATGTCTTGACTGTGCTCAGAGGGCATTGTACATGGATGTGATGCTGGAGAATTACAACAATCTATTTTTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071267_MULTIEX1-4/4=3-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCTTCCCTCAGATTGAAC
R:
TAGATTGTTGTAATTCTCCAGCATCA
Band lengths:
242-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: