MmuEX0053711 @ mm9
Exon Skipping
Gene
ENSMUSG00000059142 | Zfp945
Description
zinc finger protein 945 [Source:MGI Symbol;Acc:MGI:2445132]
Coordinates
chr17:22983664-22994343:-
Coord C1 exon
chr17:22994217-22994343
Coord A exon
chr17:22990510-22990634
Coord C2 exon
chr17:22983664-22989733
Length
125 bp
Sequences
Splice sites
3' ss Seq
CTGGCCTTCTTGGGTTGCAGGTA
3' ss Score
9.2
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
GAACTGTTAACATTCAAGGAAGTGGCTGTTGACTTCTCACAGGAGGAATGGGAATGTCTTGACTGTGCTCAGAGGGCATTGTACATGGATGTGATGCTAGAGAATTACAACAATCTACTCTTTGTGG
Seq A exon
GTATTCCTGCTTGTCCCAGATGGTAGTAGGCCTTCATGAATGCAGACAGAGCTGTTCCTCCATGATGTTATAGGCCTCTGGAGTTGCAGATAGAAGTATGGACTGGAGGATAGAACACAGTGGAG
Seq C2 exon
AGAATAATCATCATGTGTGTGTCAAACATGATGAAGTCTTGGGCCAAGGCTCAAAGTATAGTGCCCCTGAGCATGTGAATATTCAAGAGAAGTCTAATAAATGGAAGGAATGTGGCAAAATGATTCATGAATCCTCCAAAAGTACACCTTATCAAACCAACAACAGAGATGCCTCCATTGAATCATCAAACAGACACAAAACTGAGAATGCCAGGGAACCATGCAAGTATAAGGACTGTGTGAATGGCTTAAATTTGTATCCCATCACTTGTCACAATCAAACAGTGTACCTAGAAATAAAAGAACATACCAAAACACTGTATGATGAAGCTTTTCTCTCTAAATATAAACTCATGCTAAAAGGAAACAATAGTGGAATGAAATCACACAAGTGCAGGAAGTCTGGAAAATTCTTCACGATGACCTCAAGCCTGAGTGGGCATCCGAGAGATCATGCTAGAGAGAAGCCCTATCAATGTACAAAGTGTAGTAAATCCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059142-'6-7,'6-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.088
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=3.6),PF0009621=zf-C2H2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.5),PF0013017=C1_1=WD(100=8.2),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.5),PF0013017=C1_1=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGTGCTCAGAGGGCATTG
R:
GGAGGCATCTCTGTTGTTGGT
Band lengths:
243-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: