MmuEX0053721 @ mm9
Exon Skipping
Gene
ENSMUSG00000067931 | Zfp948
Description
zinc finger protein 948 [Source:MGI Symbol;Acc:MGI:3040683]
Coordinates
chr17:21710821-21720109:+
Coord C1 exon
chr17:21710821-21710920
Coord A exon
chr17:21714261-21714421
Coord C2 exon
chr17:21719997-21720109
Length
161 bp
Sequences
Splice sites
3' ss Seq
TATCGCCTTTCTGCCTCAAGCTT
3' ss Score
6.75
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GACTACAAGCTGGCTATTCATCATTCCTGACAGAGAAATTTAAAGAAGAGAAACAAACAAACAAAAAAAAATGGCTGATTCTCCAGTAAACATGTCCCAG
Seq A exon
CTTACATAATTGGCAAGGACCGCTGACAGGGTCATACAAGATGAGTTTTACAGAAGATGCTCAGACCAGCCATGAAGCAGACACTGGTCAAGCTGCCTGGACTCTGGAGCACAAGGCACGCTCATGGAGGAAGTGGCTTATTAGATCACTTCTCAACTCAG
Seq C2 exon
TTTGACCCATTGATATTAAAGGACCACTAGCCAACTATTCATTCTTCCTCAAAGAGAAAATCAAAGAAGAGACACAGAAAGAAATGGCTAAATCTCCAGTAAACATGTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000067931-'5-4,'5-3,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.100
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTACAAGCTGGCTATTCATCA
R:
GGACATGTTTACTGGAGATTTAGCCA
Band lengths:
210-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: