MmuEX0053722 @ mm10
Exon Skipping
Gene
ENSMUSG00000067931 | Zfp948
Description
zinc finger protein 948 [Source:MGI Symbol;Acc:MGI:3040683]
Coordinates
chr17:21573857-21584906:+
Coord C1 exon
chr17:21573857-21573956
Coord A exon
chr17:21583030-21583142
Coord C2 exon
chr17:21584780-21584906
Length
113 bp
Sequences
Splice sites
3' ss Seq
TATTAATTTTACTTTTCCAGTTT
3' ss Score
8.06
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
GACTACAAGCTGGCTATTCATCATTCCTGACAGAGAAATTTAAAGAAGAGAAACAAACAAACAAAAAAAAATGGCTGATTCTCCAGTAAACATGTCCCAG
Seq A exon
TTTGACCCATTGATATTAAAGGACCACTAGCCAACTATTCATTCTTCCTCAAAGAGAAAATCAAAGAAGAGACACAGAAAGAAATGGCTAAATCTCCAGTAAACATGTCCAAG
Seq C2 exon
CATCTGTTAACATTTCGAGATGTGGCCGTGGACTTCTCCCAGAAGGAGTGGGAGTGCCTGGACTCTGCTCAGAGGGCTTTGTACATTGACGTGATGGTGGAGAATTATAGCAACCTGGTGTTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000067931-'10-10,'10-8,12-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.100 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTACAAGCTGGCTATTCATCA
R:
CCACAAACACCAGGTTGCTAT
Band lengths:
227-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types