MmuEX0053728 @ mm9
Exon Skipping
Gene
ENSMUSG00000072774 | Zfp951
Description
zinc finger protein 951 [Source:MGI Symbol;Acc:MGI:2441896]
Coordinates
chr5:105246016-105289087:-
Coord C1 exon
chr5:105288958-105289087
Coord A exon
chr5:105246327-105246371
Coord C2 exon
chr5:105246016-105246142
Length
45 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTTTATATCTGTTAGGTA
3' ss Score
8.11
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ACATTGCAGGTTCTGCGAGAGTTTACGTGATTTTGTGTGTTGTTTTTTCAACTCAACTGCCGAGTACTGAGGGAAGCTCAGGAAGCTCTGAAGATACAGCATGGCCAGCACATCCTCACTCTCCGCAAAG
Seq A exon
GTACTCACAGATACTCTTCTTGCAAATGCATGCCCCATTCAAAAG
Seq C2 exon
AATGCAGTGACATATGAGGATGTGCATGTGAACTTTACTCGGGAAGAATGGGCTTTGCTGGATCCTTCCCAGAAGAGTCTCTACAAGGATGTGATGCTGGAGACCTACAGGACCCTCAGAGCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000072774_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGTACTGAGGGAAGCTCA
R:
TCCAGCAAAGCCCATTCTTCC
Band lengths:
133-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: