MmuEX0053766 @ mm9
Exon Skipping
Gene
ENSMUSG00000034949 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:MGI Symbol;Acc:MGI:2143792]
Coordinates
chr10:80695900-80700336:+
Coord C1 exon
chr10:80695900-80695987
Coord A exon
chr10:80696356-80696506
Coord C2 exon
chr10:80700102-80700336
Length
151 bp
Sequences
Splice sites
3' ss Seq
TGTATGGGGGAATCCTCCAGGCA
3' ss Score
0.42
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GACGTCACTCCCGTGGGCTCCGGGAGGACGTGGACATGGCGGCTAGCAGCTCTTCCGGCCTCGCGCAGGGCACCAACCCGTCGTCCAG
Seq A exon
GCAGGGATGGAGTCAGAGTTCTGGTTCCTGATGGATGGAGGACCCTCGAGACGGGGATGGAGTCTGGGGTTCTGATGTCTAGTGGATGGGGGACCCTCCAGATGGGCCTGAATTGGGGGTTCTAATCCCTGATGAATGGGGGACCCTCCAG
Seq C2 exon
CACCCAGTCGTCCTCCGCTTTCCCCCTCCCAGCTACTGGGGCCAGCTACACTGTGCAGTTTACCCCCAAAATGGAGAGCACCGCCAGCCTGGCCCTGGCCCCCGCGAGCCAGCTGCCTGCGCCTGGAGGAGGAGTTGCGGTGGGGTATAGCTGCTCCCAGCCCCAAGCCAGCCAGGGCCCCACATCCAGCAGCCAGCCCCGGGGTCCTGTGCCTACCTCTGCATCCGCCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034949_MULTIEX1-1/4=C1-2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=0.984 A=0.637 C2=0.944
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAACCCGTCGTCCAG
R:
GATGCAGAGGTAGGCACAGGA
Band lengths:
243-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: