MmuEX0053871 @ mm9
Exon Skipping
Gene
ENSMUSG00000030757 | Zkscan2
Description
zinc finger with KRAB and SCAN domains 2 [Source:MGI Symbol;Acc:MGI:2444060]
Coordinates
chr7:130623030-130628945:-
Coord C1 exon
chr7:130628454-130628945
Coord A exon
chr7:130626155-130626198
Coord C2 exon
chr7:130623030-130624286
Length
44 bp
Sequences
Splice sites
3' ss Seq
TGGATTATTTGTTTTTCCAGATG
3' ss Score
8.61
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTGTGCATTGGGGCTATGAAGAAACCAAGACTTTTCTTGATATCCTTCAAGAGACCCGATTTTATGAAGCACTTCAAGCCTGCCATCGGAAGAGCAAATTGTATGGAGTCGTGGCTGAACAACTTCGAGAATGTGGCTTTCTCCGGACACCAGAGCAATGCCGAACCAAGTTCAAAAGCCTTCAGAAGAGTTACCGAAAAGTGAAGAATGGCCATGTACTGGAGTCCTGTGCATTTTACAAGGAGATGGATGCCCTGGTTAACTGCCGTCCATCCTCCCTTTCCACCAACACCTCAGAAGAAGTCCCATCCCTCTCAAGGCAGGAAAGGGGACATATTGAGGTTGAACCCCGAGAGCCTACAACCTGGGAACCTGTGGAGACCCCACAGGAAGCAGTGTTAGAAGATTCTGGCAGTGAGAGACTGAGTGAGGAGGAAATGATAGAAGAGCCAGAACTTGAAGGACCTTCAGGCCTGCTGCAAAGCCCAGCTG
Seq A exon
ATGAATTTGAAACTTCATTAATCATAAATAGATCATTGTTAAAG
Seq C2 exon
GTTTTGAAATTGGAACTATTATTAAGGAAGACCCAACACAGGTAATGTTTAAGGACACAGAGCCCCATAGGGTATTAATGGAAAAACCTAAAAGACTTGTTTCCCAGAATACTAACCCCAGTAAATACTGTAAAAGGGAGTACTTCTCAGGAAGACACTGTGAAAACCTTCAAGGAGTTAGACAGGGAAAGCTGATGTCTCAACCTAGAGATACAGGGAAGGCTGTGGTGCATCAGAGGCCTTGTGTGGGGAGGAGACCATATAGACTTCTCAAATATGGGGAAAACTTTGGAAGGAGTGCCCGTCTTGTGTGCAGGATGACCCACCAGAAGGAGAATCCTTTTAAGTGTGGTGTCTGTGGGAAGTGCTTTGGTAGGAGCAGGAGCCTTATCAGACACCAAAGAATCCACACTGGGGAAAAGCCTTTCAAATGTCCTGACTGTGGGAAAAGCTTTAATGACTCCTCAAATTTTGGAGCCCACCAGAGAGTCCATACTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030757_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.421 A=0.000 C2=0.183
Domain overlap (PFAM):
C1:
PF138371=Myb_DNA-bind_4=WD(100=52.1)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAGACTGAGTGAGGAGGA
R:
CCTATGGGGCTCTGTGTCCTT
Band lengths:
148-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: