MmuEX0053872 @ mm10
Exon Skipping
Gene
ENSMUSG00000030757 | Zkscan2
Description
zinc finger with KRAB and SCAN domains 2 [Source:MGI Symbol;Acc:MGI:2444060]
Coordinates
chr7:123484940-123490262:-
Coord C1 exon
chr7:123489579-123490262
Coord A exon
chr7:123487486-123487645
Coord C2 exon
chr7:123484940-123485431
Length
160 bp
Sequences
Splice sites
3' ss Seq
GTCGCTTTCGTTTGTTTTAGAAA
3' ss Score
10.27
5' ss Seq
CTGGTACTT
5' ss Score
4.74
Exon sequences
Seq C1 exon
ACAGTGGGGTTTGGAAGATGAAAAGATTGCAGGTGTGCACTGGAGCTATGAAGAAACCAAGACTTTTCTTGCAATTCTCAAGGAATCTCGCTTTTATGAAACACTCCAGGCTTGTCCCCGAAATAGCCAGGTATATGGTGCTGTGGCTGAATGGTTGCGAGAATGTGGCTTCCTCCGAACACCAGAGCAGTGCCGGACCAAGTTCAAAAGTCTTCAGAAGAGTTATCGAAAAGTGAGAAATGGCCACATGCTAGAACCCTGTGCCTTCTTTGAGGACATGGATGCCTTGTTAAACCCTGCAGCCCACACTTCATCTACTGAGAGGCCAAAGGTTGTGATCTCTCTCCCACTAAAGAGAACTGCTATTAGTGCTAAAGAGCAGGTCAGTTTGGTGGAGGAGGAGGAAGGTGCTGAAGACTCCGATGGTGATGAAGTGGGCATTGAGTTTATACGCAAGTCTGAAATCCGTGCTGCCCCTGTCTTATTTCAAAACCTAAGTG
Seq A exon
AAACAGAAGACTCCTCGGCATTTCCTTTTTATAAGTTGGAAACTTAGCTGAATGGGATGCTATCCTGAGGACACGACTCATTTCATTTCACATCAGACACCGGTCTTTAAAGTTCTCATCTCTTTGAACACAAGATTTTTCTTCAGCATTCAATTTCCTG
Seq C2 exon
GTGTGCATTGGGGCTATGAAGAAACCAAGACTTTTCTTGATATCCTTCAAGAGACCCGATTTTATGAAGCACTTCAAGCCTGCCATCGGAAGAGCAAATTGTATGGAGTCGTGGCTGAACAACTTCGAGAATGTGGCTTTCTCCGGACACCAGAGCAATGCCGAACCAAGTTCAAAAGCCTTCAGAAGAGTTACCGAAAAGTGAAGAATGGCCATGTACTGGAGTCCTGTGCATTTTACAAGGAGATGGATGCCCTGGTTAACTGCCGTCCATCCTCCCTTTCCACCAACACCTCAGAAGAAGTCCCATCCCTCTCAAGGCAGGAAAGGGGACATATTGAGGTTGAACCCCGAGAGCCTACAACCTGGGAACCTGTGGAGACCCCACAGGAAGCAGTGTTAGAAGATTCTGGCAGTGAGAGACTGAGTGAGGAGGAAATGATAGAAGAGCCAGAACTTGAAGGACCTTCAGGCCTGCTGCAAAGCCCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030757_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=0.000 C2=0.421
Domain overlap (PFAM):
C1:
PF138371=Myb_DNA-bind_4=WD(100=37.6),PF138371=Myb_DNA-bind_4=PU(0.1=0.0)
A:
NO
C2:
PF138371=Myb_DNA-bind_4=WD(100=52.1)
Main Inclusion Isoform:
ENSMUST00000042470fB4739
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGAAGACTCCGATGGTG
R:
GTGTCCGGAGAAAGCCACATT
Band lengths:
243-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types