MmuEX0053875 @ mm9
Exon Skipping
Gene
ENSMUSG00000021327 | Zkscan3
Description
zinc finger with KRAB and SCAN domains 3 [Source:MGI Symbol;Acc:MGI:1919989]
Coordinates
chr13:21478882-21485954:-
Coord C1 exon
chr13:21485831-21485954
Coord A exon
chr13:21485304-21485664
Coord C2 exon
chr13:21478882-21480575
Length
361 bp
Sequences
Splice sites
3' ss Seq
TTCTTTATCCTTTGTCTTAGTTA
3' ss Score
7.41
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GGGTTGCTGAAAATGGAAGATGTAGCCCCAGTCCTTTCCCCCAGATGGACAGAGCAGGATTCATCTCAGATGAACCTCTACAAAGATGGAATGCAGGAGCACTCTGGCAGCCTGGTTTCCCTGG
Seq A exon
TTAGGGTTTCTATTGCTATGACAAAACACTATAACCAAAAGCAACTTGGAGAAGAAAGGATTTATTTCAACTTACAGTTCCACACCATAGTCTACCATCAAAGGAAGTCAAGACAGGAACTCAAAGCAGGAGCCTGGAGGTAGAAACAAAAACTACAGAAGAGTACTGCTTACTGGCTTGCTCCTCATGGCCTAATCAGTCTGTTTTCTTGTGTACTTCAGGGACACTTGCTCAGGACTGGCACTGCCACAATGAGCTAGGTCTTCCCACATTGACAGTTAATCGAGGAAATGTCCCCACAAACTTGCCTACAGGCCAGTCTAATAGAGGAATCTTCTCAATTAAGATTCCTTCTTCCCAG
Seq C2 exon
ATCAGGACATGCAGACTAAGGTTAGGGACTTGCCTCGAGCTGAAGAATATAGGGACCAAAAGCCTGAGCAGACAGTGTGCTTCCTGGGTGAAGACACTGTCCCGATTCCTACAGGTGCAGAAGCCAGTGAGCAGGAAGGCAAGTTACAGGCAGCACAGAAGAGTGCCACAGGAACCAGGCGGTTCTATTGCCGTGAATGTGGGAAGAGCTTTGCTCAGAGTTCAGGCCTAAGTAAACACAAAAGAATCCACACTGGATTGAAACCCTATGAATGTGAGGAGTGTGGCAAAGCCTTCATTGGAAGCTCAGCTCTCATTATTCATCAGAGAGTTCACACTGGTGAGAAGCCATATGAGTGTGAAGAATGTGGTAAGGCCTTCAGTCACAGCTCAGATCTCATCAAACACCAGAGAACCCACACTGGGGAAAAGCCCTACGAGTGTGATGACTGTGGGAAAACCTTCACTCAGAGCTGCAGCCTCCTTGAACATCACAGAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021327_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.544 A=0.051 C2=0.207
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(95.0=90.5)
A:
PF0135222=KRAB=PD(2.5=2.1)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=8.6),PF0013017=C1_1=WD(100=18.8),PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=17.2),PF134651=zf-H2C2_2=WD(100=8.6)
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGATGTAGCCCCAGTCCT
R:
ACTTAGGCCTGAACTCTGAGCA
Band lengths:
343-704
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: