MmuEX0053910 @ mm10
Exon Skipping
Gene
ENSMUSG00000043872 | Zmym1
Description
zinc finger, MYM domain containing 1 [Source:MGI Symbol;Acc:MGI:1915560]
Coordinates
chr4:127058793-127061152:-
Coord C1 exon
chr4:127060996-127061152
Coord A exon
chr4:127059510-127059659
Coord C2 exon
chr4:127058793-127059031
Length
150 bp
Sequences
Splice sites
3' ss Seq
TGCGTCTATGTGAATTTCAGCAC
3' ss Score
6.1
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GGGGCGGAGCCGGCGGGGTTGTTTGCACGGCAAAATGCGAGTGGGCGCTTCCCGCCGCTGAGTTGGAGACAGATCAGCCATCCTCGTGGAGCCGCTCAGGCCCGCTTTTCCAGAGAGAGGCGGCATTTCTCCCGTCCTGAGGAGGGTGACGCGACAG
Seq A exon
CACACCACATGTATTCAAGAGCTGGAGGAGGCCAGAAGCTGGGGTTAAATCTCTTGAAACTGGAGTTACAGGTGCTGGGAACTGAACCCAGGTCCTCTGTAAGAGCAACAAAGTGCCCTTAACCAATGAATCACCCTTCTAATCCTAAAT
Seq C2 exon
CTCCACAGTTGACGGTCTTCTCTCCTCTCACCTGACTTGAATAAAATGCTTCCTGCAGTTCCAGGCACAGCTGTTCGACTCTCCTGTGCCAAATGTAAAAGAGTTTTTCAGGAGGGACAGACAGCTTTTCAGAGGAAAGGGTCTGCTGAGCTTTTCTGCTCAAGACTATGCATTGATGGGTACCCGTCACCTGCTGTGTCTCCAGCTCCTCTCAAAAGGATGTGCTTAAATTGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043872_MULTIEX1-1/5=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF064679=zf-FCS=WD(100=63.1),PF064679=zf-FCS=PU(27.3=18.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTCTCCCGTCCTGAGGAGG
R:
TGAGAGGAGCTGGAGACACAG
Band lengths:
247-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types