MmuEX0053923 @ mm9
Exon Skipping
Gene
ENSMUSG00000021945 | Zmym2
Description
zinc finger, MYM-type 2 [Source:MGI Symbol;Acc:MGI:1923257]
Coordinates
chr14:57575689-57577139:+
Coord C1 exon
chr14:57575689-57575940
Coord A exon
chr14:57576030-57576138
Coord C2 exon
chr14:57577019-57577139
Length
109 bp
Sequences
Splice sites
3' ss Seq
ATGTGCATCATACATTTCAGTGT
3' ss Score
5.96
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
GGTCAATTTTCTCTCGAGTTGAAGAAGACTATCTCTGGAGGATAAAACAACTAGGATCCCACTCTCCAGTAGCACTTTTGAATACCCTATTCTACTTTAACACTAAGTATTTTGGCCTGAAAACAGTGGAACAACACTTAAGACTTTCCTTTGGCACTGTGTTTAGGCATTGGAAAAAAAATCCTTTAACAATGGAAAATAAAGCATGTCTTCGCTATCAGGTGTCTTCCTTATGTGGAACAGACAATGAAG
Seq A exon
TGTTTGCTGGTGTCATAAGAAGGTGTCAGACCCCTTGGAACTGGGGTATGAATGATTGTGAGTCACCGTGTAGATGCAGGGAACTCAACCTAGGACTTCTGCAAGAGCA
Seq C2 exon
ATAAAATTGCTACTGGAAAACGAAAACATGAAGATGATGAGCCAGTATTTGAACAAGTTGAAAACACAGCCAACCCTTCTAGATGTCCTGTGAAAATGTTTGAATGCTACTTGTCTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021945_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.506
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(48.8=98.8)
A:
PF120123=DUF3504=PD(22.7=67.6)
C2:
PF120123=DUF3504=FE(23.3=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCCCACTCTCCAGTAGCA
R:
ACTGGCTCATCATCTTCATGT
Band lengths:
245-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: