MmuEX0053924 @ mm10
Exon Skipping
Gene
ENSMUSG00000021945 | Zmym2
Description
zinc finger, MYM-type 2 [Source:MGI Symbol;Acc:MGI:1923257]
Coordinates
chr14:56944066-56946616:+
Coord C1 exon
chr14:56944066-56944237
Coord A exon
chr14:56944686-56944763
Coord C2 exon
chr14:56946491-56946616
Length
78 bp
Sequences
Splice sites
3' ss Seq
ATAATTTGTTTTATTTTGAGGTG
3' ss Score
2.81
5' ss Seq
TAGGTACGG
5' ss Score
7.82
Exon sequences
Seq C1 exon
GTGCCCGTTCCTGTGTTTCTGCCTGCTCCATTGGACAGCAGTGAGAAGATTCCTGCCACAGTTGAGGACCTCAAAAGCAAAGTTTCTTCAGATCCTCTTGATTCAGAATTGCTTACGATGACAGATATGATGACTGAAGAGGAGGGGAAAGCAGAGGCATCCAACATCAATA
Seq A exon
GTGGAGATTTTGTATGTGTCCTGGGCAGTAAACTCTTGGCCTCAAGACAAGGTCTTCCAGCCTCCTCTCCTGAAGTAG
Seq C2 exon
GTGTAATTATTGAGACAGACATAATTGGCTCAGATCTTACAAAGAACTCTGACCCAGATATACAATCCAACATGCCCGATGTACCATATGAACCAGATTTGGATATTGAAATAGATTTCCCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021945_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.789 A=0.074 C2=0.599
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000022511fB4747
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCATTGGACAGCAGTGAG
R:
TCTGAGCCAATTATGTCTGTCTCA
Band lengths:
182-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types