MmuEX0053953 @ mm10
Exon Skipping
Gene
ENSMUSG00000042408 | Zmym6
Description
zinc finger, MYM-type 6 [Source:MGI Symbol;Acc:MGI:106505]
Coordinates
chr4:127088329-127093083:+
Coord C1 exon
chr4:127088329-127088554
Coord A exon
chr4:127090907-127091162
Coord C2 exon
chr4:127092912-127093083
Length
256 bp
Sequences
Splice sites
3' ss Seq
TAATATATTTCTGTTTTTAGTGG
3' ss Score
7.14
5' ss Seq
ATGGTTGGT
5' ss Score
5.29
Exon sequences
Seq C1 exon
GCTTTCAGGTTGGTCTACCGTCATCCGGCCCGAGTACATCATTTCCTGCAGTTCCAGCTGCTCAAGTGTTTTGTTTTGGTTGTAAAAAACTGCTTCTTAAGGGACAACCTACCTACCGGAAGGCCGGATTTGCCCAGCTTTACTGCTCCATGGGATGCATCATCAGATTCTCCTCCGCAGTCTGCGTGCCACCTCTTCCCAAGAGAACCTGTGCACATTGCTCCAA
Seq A exon
TGGGAAAAAAAAAACACTCTTCAAAATTACTACTTGAGCCAGGCGTGGTGGCGTGCGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGATCTACAGAGTGAGTTCCAGGTCAGCCAGAGCTACAGAGAAACCGTGTCTCGAAAAACAAAAAACAAAAACAAAAACAAAACCAAAATTACTACTTGATCTGGATGCAAGCATATCCACTTATTTCCAAGATTTCATG
Seq C2 exon
AGACATTTTAAATCCGATGGATGTGATCACAACTCAGTTTGAAAATTCCTCTCTCTGCAAAGATTTCTGCAGCCAGTCATGCCTATTTTCTTATGAGCTAAAGAAGCCTGTTGTTACCATATATACCAGTGGCATTTCAGCAAAGTGCAGTATGTGTCAGAAGGGCACTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042408_MULTIEX1-4/6=3-5
Average complexity
S
Mappability confidence:
93%=80=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PU(27.3=15.8)
A:
NO
C2:
PF064679=zf-FCS=PD(70.5=53.4)
Main Inclusion Isoform:
ENSMUST00000046751fB4753
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACAACCTACCTACCGGAA
R:
GCCCTTCTGACACATACTGCA
Band lengths:
292-548
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types