MmuEX0054016 @ mm9
Exon Skipping
Gene
ENSMUSG00000042554 | Zp3r
Description
zona pellucida 3 receptor [Source:MGI Symbol;Acc:MGI:104965]
Coordinates
chr1:132479977-132493418:-
Coord C1 exon
chr1:132493236-132493418
Coord A exon
chr1:132487941-132488138
Coord C2 exon
chr1:132479977-132480177
Length
198 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCTTTATGATCAGATG
3' ss Score
8.23
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
AAATCGTCTGCCATCGGCCGCAGATTCTGAAGGGATACTTGGCCCCTGGATTTCGACAGTTCTATGCGTACAGAGACGCTCTTGAGATCCGATGCAAGAAGGGTTTTATCCTCAGAGGCAGCAGTGTGATCCACTGTGAAGCAAATGGCGAGTGGTTTCCTTCTATCCCCACCTGTGAACCCA
Seq A exon
ATGGTTGTACCAATATACCAGATATTTCCTATGCTTCCTGGGAGGGATATAAGTTTCCATTAAGAAATTTTGAAGTATTTGAAATTGGGGCCAAATTGAAATACCAGTGCAAGCCTGGTTATCGAGCAAGTCTTAACGATCCCCAGACTGTGACTTGTCAGGAAAATCTGACTTGGTCATCTACTAATGGATGTGAAA
Seq C2 exon
GGATATGTTGCCCAACACCAGATATGGAGAAAATCAAAATTGTGAGTGAAAGGAGAGATTTCACTGGCACATGCATCTATGCCTACGGAGACTATGTTTTCTACATTTGTAATGAAGGCTCTTACCCTATGTCTACGGATGGAAGGAGTTCATGTCAAGCAGATGGAAAGTGGGACCCCGCAATACCATCATGTCAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042554_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=90.3)
A:
PF0008415=Sushi=PU(95.5=95.5)
C2:
PF0008415=Sushi=PD(3.0=2.9),PF0008415=Sushi=WD(100=91.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGAGGCAGCAGTGTGATC
R:
GGTCCCACTTTCCATCTGCTT
Band lengths:
250-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types