MmuEX0054057 @ mm9
Exon Skipping
Gene
ENSMUSG00000037017 | Zscan21
Description
zinc finger and SCAN domain containing 21 [Source:MGI Symbol;Acc:MGI:99182]
Coordinates
chr5:138559064-138566918:+
Coord C1 exon
chr5:138559064-138559148
Coord A exon
chr5:138560878-138560957
Coord C2 exon
chr5:138566206-138566918
Length
80 bp
Sequences
Splice sites
3' ss Seq
CTATGAAATTTTTTTTTCAGCGA
3' ss Score
8.14
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
TGCTGTAATTACAGGTATGCACCACCACGACTTCAGCTTGGAGTTTCCAAGTGCAGAGTGTCTTAAGGGCATTATCTACTACAAG
Seq A exon
CGATATATATCTTTGTCAGACTAAATAACTGTATGTTGGGCTTGGTGACACAGCTTTAATCCCATCACTCAGGAGGAGAG
Seq C2 exon
GTTTGAAGAGTGGCACTTTAAGAACCAGAAACCCAAAGGTACCAGGTCTACTCCTAAAAGTCCTGCTGGCTCGGGAATCTGTGATGACTAAGGTGGTGGGCATGGCCACAGTTCTGGGCCCCAGGCCACCTCAGGAATCTATGGGACCTTCGCCCATTAAAGTAGAAGAGGATGAAGAGAAAGACAAGTGCTGCCCTACCCTAGAGCTATCCCATAAGCACTTCAGACAGTCTGGGAACCAAGATACCCTTGAGCCAATGGGTCCTTCGACCATTAAAGCTGAAGAGGATGAAAGCAAAGACAAGTGCCGCCCTAACCTAGAGATATCCCGTAAGAGCTTCAAGCAGTTTGGGTACCAAGACACTCTTGAGCAGTTGGGACCTTCGACCATTAAAGCTGAAGAGGATGATGAGAAGGATAAGGGCCACCCTAGCCCAGAGATATCTCGACAGCGCTTCAGGCAATTTGGGTACCATGACACTCCTGGGCCCCGAGAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037017-'2-4,'2-2,3-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.121 A=0.000 C2=0.662
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0202312=SCAN=PU(97.9=44.8),PF034808=SBP_bac_7=PU(67.9=26.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTATGCACCACCACGACTTC
R:
TGCCCACCACCTTAGTCATCA
Band lengths:
174-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types