MmuEX1000105 @ mm10
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr17:21800492-21868151:+
Coord C1 exon
chr17:21800492-21801495
Coord A exon
chr17:21824291-21824460
Coord C2 exon
chr17:21864098-21868151
Length
170 bp
Sequences
Splice sites
3' ss Seq
CATGTCATTCTACCTTACAGATA
3' ss Score
9.39
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
TATTTTGATAAATACTATCAATACTATCTTATACATGACTTATAAAGTGATGCGCTTGTTTTCCCAGAGATGAGGTCATGGTTAGTTGTGAGGAGCCGCCCTCACAGTCGCCGTTACAAGATGGCGCTGACATCCGTTGCTCATAGTAAAATGTGCGCAGGCGTCAGGGTATCATTCCATTACCTGAGCTCTGCCTTTCTCGTGGCGTTAACTGACTGATAGTGGGCAGCCAATCCCAGTGGTGCACATCTCCAACCGTTTTTTTCGCAGCCTATAAAAGGGAAGGGTTTTCTGCTCTCTGGGTCTCCTCTCCTGAAGCTGATCATCTATCTCTCGAGATGTATTAAAGCTGTACTGCAGAAGGATCCGAGTGGCCTGTGTGCGTTTTGCTGGCGAGATGGTAGCGTGGGTCATCTGGTTGCCGGAATCCCGGGAATTAACATCGCCGGCGTTGGGGAAAACCCCCGGAGACGGGGCGGATTCAGAACTGCAGGGAAAAG
Seq A exon
ATACAGTACATCTGTTTTCCATGTGTATCCTGCTGTCCTGATGTACAGACACAGATTCAATCCATCAAATATCATGTTTTGGATTTTTTTTCCAAACTGATAAATCATCATCAGGTCGAGTTACAGCCACTTCCATCATCATCTAAGAAGGCTTTTACATTGTTCCTGAG
Seq C2 exon
AGTGTTGGCCCAGAAGTTCCCCCTGACATAGAGGACTACCAATCTGGAGGGTCTTGAAGCCAGCCAAACTAGAGGTGTTCTTCATGTCCTGTTGTGCTGCCTGTGCCCTGGACTACTTGCTGCCTGACCCTACCTGCACTTAGGTTGAAAGTGAGGTGGCTCAGAAGCAACAACACAGACTCTGCAAGCAGGTGAGAAATGCTGCAGCAAGCTCATCTGAATGCTGCAGCAAGCTCCATTAATACACTTACACAGTGTTCCACTGGTCCCAAGAAAGCATCTCTTCTAAACTGCAATTCCAGGTGGACTGATATTGTCTGGGCCAGCAATCCTTGGTCTCTCAGGCAGTCCTCAATTAGGTCCTTCTATAGGAGATTCTTTACAGCTGCACGCCCCCTGGCCTTTATATACAGTTGGCCCTCCAGTTCCTGCTACATTGGAAATCCTTTTGTTTTTTGATTTTGGCAATCTAGTTCCAGCCAGGGTGCTGCCATTGCCTC
VastDB Features
Vast-tools module Information
Secondary ID
Mm.152544_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGTTTTCTGCTCTCTGGGT
R:
ATGTCAGGGGGAACTTCTGGG
Band lengths:
246-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types