MmuEX1001108 @ mm10
Exon Skipping
Gene
ENSMUSG00000104908 | 1700015C17Rik
Description
RIKEN cDNA 1700015C17 gene [Source:MGI Symbol;Acc:MGI:1924178]
Coordinates
chr3:153467216-153475564:-
Coord C1 exon
chr3:153475491-153475564
Coord A exon
chr3:153468373-153468460
Coord C2 exon
chr3:153467216-153467356
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTCATTTTGCTTTCTTACAGTCC
3' ss Score
10.11
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
ACTCATCTCAATAGACAGCATATCCTAGCGTGGCAGAACAGGCTGGGCAGCAGAGACCTACCTGGAGTTCTGAT
Seq A exon
TCCGAGACCACCTGCCCAAGGGTGGCAGCGGGCTGAGTTCTCACATACCCATCATTAGTCAAGAAAATGCCCTAACGCCTGACCACAG
Seq C2 exon
GGATCAGAGGTCATTCTCCACTACAGAGAAAACTTGGGGAGCAGCCTGAGAAACATCAAATGCTGGAAGGAGATGGGAGAAGAACACTATTATGAACCAGATGACTCCATCTTAAGTGAAATAAACCCAAGCAACATCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000104908-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGAGACCTACCTGGAGT
R:
TTGATGTTGCTTGGGTTTATTTCACT
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types