MmuEX1001891 @ mm10
Exon Skipping
Gene
ENSMUSG00000096405 | 4930474N05Rik
Description
RIKEN cDNA 4930474N05 gene [Source:MGI Symbol;Acc:MGI:3586330]
Coordinates
chr14:36095322-36098325:+
Coord C1 exon
chr14:36095322-36095494
Coord A exon
chr14:36096397-36096757
Coord C2 exon
chr14:36098263-36098325
Length
361 bp
Sequences
Splice sites
3' ss Seq
TTCTGTCTGGTCTTCTCTAGGTA
3' ss Score
11.73
5' ss Seq
AGGGTAAAG
5' ss Score
5.2
Exon sequences
Seq C1 exon
GATCTGAGGGAGCCACGTAGAGAGTCTCCCATCAGTGCTGAAATGGTTGTTAAGTTGGTGAACAACCTGGTGCCTTCACTGCAGGAAGGAGACCACTTCTTTGTCTCTATATTTCTCTCCACATACAGAAGCTTTGTTACCCCCCTACAGGTACTGGGCCTGCTGTTCATGAG
Seq A exon
GTATCCATACTTCCACCCTCATTCTGTTGAGCATAGACAAGTAAGGAGCAGCCTCTGTAACTTCCTGCACACATGGATGGACAAGAACCCTGAGGACTTTTGTGACCCCTCAGACATGTTACCTCTGACATACCTGAAGGCCTATTTGAGTGTGCACATGCCACACTCTGAGCTTTTTATCCGTGTCGATAGGCTTCTGAACGAGTTGTGGGAAGAACAGGACAAGGATTCCCATGCCAAGAATGAGGAAGACTCAGATCTGGGAAGACATACCTCCTCCGATCCAGAACTTAAACGTTGTAAATAGCAGAGGGGGCCAGGCCTCTGTTTTAATCTACCAAGATTATCAAAGATCAAGAGG
Seq C2 exon
GCAAATGGATGGAACTATTAAATATCCTGTGTGAGGTGACATAGAACCAAAAGGACATTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000096405_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.235 C2=NA
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PU(48.5=81.0)
A:
PF0061815=RasGEF_N=PD(50.5=47.6)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTGAGGGAGCCACGTAGA
R:
TGTCCTTTTGGTTCTATGTCACCT
Band lengths:
230-591
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types