MmuEX1001964 @ mm10
Exon Skipping
Gene
ENSMUSG00000072762 | 4930522L14Rik
Description
RIKEN cDNA 4930522L14 gene [Source:MGI Symbol;Acc:MGI:1925270]
Coordinates
chr5:109735990-109739010:-
Coord C1 exon
chr5:109738950-109739010
Coord A exon
chr5:109738318-109738408
Coord C2 exon
chr5:109735990-109737799
Length
91 bp
Sequences
Splice sites
3' ss Seq
TGTTATTCCTTTTTTAATAGGTA
3' ss Score
9.42
5' ss Seq
AATGTACGT
5' ss Score
6.58
Exon sequences
Seq C1 exon
GCTACAATTGGGAAGACCATAATATTGAAGAACATTGTCAAAGTTCCAGAAGACATGGAAG
Seq A exon
GTATATCCTGTATCACAATGGATACAAGCTGGGCGAGCATAGGGATATTGAATAAGCAATGTAACTCTCTCACTCCCAGAACAATTGAAAT
Seq C2 exon
GAATGAAAGAATTCTTACTGGAGAGAATCCCTATGAAGGCATTCAGTGCGGTGAAGCCTTTGTTCATCACAATAGTTTCCGAATGCAGAAAATAACACACACTGGAGAGAAACGCTACAAATGCAGTCAATGTGGTAAAGCCTATGCAGGACCCCATACTCTCCAAATACATGAAAGAACACATAGTGGAGAGAAACCGTATGAATGTAAGCAATGTAGTAAATCCTTTGCTTCTCATGGTCAACTTCGAAAACATGAAAGAATTCATACTCGAGGGAAATCTTACAAATGTAATCAATGTTCTAAAGCCTTTGTATACCCTGGTAATCTTCGAATGCATAAAAGAATGCATACTGAACACAAACCCTATGAATGTAATCAATGTACTAAATCCTTTGCTTCTCATCGTCAACTTCGAATACATGAAAGAATTCATACTGAAGAGAAACCCTATGAATGTAATCAATGTAGTAAAACCTTTGCTTGTCATGGTCAACTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000072762_MULTIEX1-3/3=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.238 A=0.000 C2=0.103
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.3)
Main Inclusion Isoform:
ENSMUST00000112547fB4944
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAAAGTTCCAGAAGACATGGA
R:
TGGGGTCCTGCATAGGCTTTA
Band lengths:
182-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types