MmuEX1002034 @ mm10
Exon Skipping
Gene
ENSMUSG00000026882 | 4930568D16Rik
Description
RIKEN cDNA 4930568D16 gene [Source:MGI Symbol;Acc:MGI:1923109]
Coordinates
chr2:35362320-35364789:-
Coord C1 exon
chr2:35364754-35364789
Coord A exon
chr2:35364469-35364522
Coord C2 exon
chr2:35362320-35362367
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTCATCTTTTCACTTTACAGATT
3' ss Score
10.77
5' ss Seq
TATGTATGT
5' ss Score
3.25
Exon sequences
Seq C1 exon
AACAAAGGATCACCTACAGAAGATGTATGCCTGCTG
Seq A exon
ATTCTTTGCATACGTATCGCGGCTTCCAGCTTTGTGTTTTCATGAGATTCCTAT
Seq C2 exon
GAAAGATCACTTAGAAGAACCTCATCTCTCCACCTGGTTTGATCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026882_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(3.9=100)
A:
NA
C2:
PF034148=Glyco_transf_6=FE(5.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCACCTACAGAAGATGTATGCC
R:
TGGATCAAACCAGGTGGAGAGA
Band lengths:
76-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types