MmuEX1002190 @ mm10
Exon Skipping
Gene
ENSMUSG00000053896 | 4933409G03Rik
Description
RIKEN cDNA 4933409G03 gene [Source:MGI Symbol;Acc:MGI:3045336]
Coordinates
chr2:68588912-68591530:+
Coord C1 exon
chr2:68588912-68588987
Coord A exon
chr2:68589901-68590164
Coord C2 exon
chr2:68591460-68591530
Length
264 bp
Sequences
Splice sites
3' ss Seq
TTTCTTGCATGGTTCAGTAGAAG
3' ss Score
1.82
5' ss Seq
TTAGTGCGT
5' ss Score
1.22
Exon sequences
Seq C1 exon
CCTACTACCACCGAAGTGGAAGATTTTCATCAAGATGTAGCAGCAGAAGAGGCAGAAGCAAACCCATCCCAGTCAG
Seq A exon
AAGAGAGACACAGAACACTTGCTGGAAAGCATCAGAATGGACCCCTTTGGCACCAACCACAGGAGTGTACATCGCAAACAAGGCCATGGGAGCATAATCCACAAAGTGCCCACAGTTAGCGGATGTCCTGCATCCTTGCTCATCACCTGGAAGTGTAATCCACTCAGTGCCGACAGTTGGTGGATGTCCTGCATCCTTTCGCATCACATTTGCTAGCATGAACGTGCTGATGAGCAGGACTCTGCTCTTCAGAAATCCAGATTA
Seq C2 exon
AACCAGGCTTAGGAGTGTCCCCAGAGGAGAAAGCAAAGACATCTGACCACAATGAAAATAACTGGTCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053896-'6-9,'6-8,7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000102713fB4988
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGAAGTGGAAGATTTTCATCA
R:
CAGTGACCAGTTATTTTCATTGTGGT
Band lengths:
139-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types