MmuEX1002318 @ mm10
Exon Skipping
Gene
ENSMUSG00000006204 | 5430419D17Rik
Description
RIKEN cDNA 5430419D17 gene [Source:MGI Symbol;Acc:MGI:1918645]
Coordinates
chr7:131266779-131269160:+
Coord C1 exon
chr7:131266779-131266802
Coord A exon
chr7:131267475-131267516
Coord C2 exon
chr7:131268846-131269160
Length
42 bp
Sequences
Splice sites
3' ss Seq
CCCCATTCTCACCTGTGCAGCTA
3' ss Score
8.32
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
ATTCTACAGCCAATGGACATTCAG
Seq A exon
CTACTTCAGCTCCTGAGGAACATCTAAGTGATTTGCATCCAG
Seq C2 exon
ATCTGCCGCTGGTGAGACTGTCTGACGGGAGGAGCCAGTGTGAGGGCCGTGTAGAAGTCTACTTCAATGGGACCTGGGGGACTGTGTGTGATGATCTTTGGGGCATACAGGCCGCCCAAGTGGTATGTCAACAACTGGGCTGTGGGGTGGCCCTGGCAGCCCCCAGGAGCAGTCTGTTTGGCGATGGCTCTGGCCCCATCTTCCTAGACGACATGAGATGCTTGGGCACAGAGACCAACCTGGGGCAGTGCCACCACCCCGGCCTTTCTGTGCACAACTGTGAGCACCATGAGGATGCAGGCGCCATCTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006204_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.733 C2=0.009
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053013=SRCR=WD(100=92.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACAGCCAATGGACATTCAG
R:
GGCCTGTATGCCCCAAAGATC
Band lengths:
135-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types