MmuEX1002320 @ mm10
Exon Skipping
Gene
ENSMUSG00000006204 | 5430419D17Rik
Description
RIKEN cDNA 5430419D17 gene [Source:MGI Symbol;Acc:MGI:1918645]
Coordinates
chr7:131285165-131287109:+
Coord C1 exon
chr7:131285165-131285203
Coord A exon
chr7:131285521-131285565
Coord C2 exon
chr7:131286981-131287109
Length
45 bp
Sequences
Splice sites
3' ss Seq
CTTCTTCTCTGTGATCATAGACA
3' ss Score
5.5
5' ss Seq
GTGGTAAAG
5' ss Score
3.86
Exon sequences
Seq C1 exon
GCGTTTCTTCAGCCTCGGCAGAAGCAGGCTCTCCAAATG
Seq A exon
ACATGTCTTCAACCTCAACCGAAGGGAAGAGTAGAGAGCCAAGTG
Seq C2 exon
AAAATTAATCTACTTAAGTCATATTGACCACAATGCAAAGATCAGCAAAGACAGTCATCTTTTAAATCATCCTGTTCTCTGGGTTACACACAGATGCATCTTTAGCCTCGGCGGAGGAGACCTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006204-'72-77,'72-76,73-77
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000208921fB5001
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAGCAGGCTCTCCAAAT
R:
GCCGAGGCTAAAGATGCATCT
Band lengths:
134-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types