MmuEX1002329 @ mm10
Exon Skipping
Gene
ENSMUSG00000006204 | 5430419D17Rik
Description
RIKEN cDNA 5430419D17 gene [Source:MGI Symbol;Acc:MGI:1918645]
Coordinates
chr7:131264124-131266130:+
Coord C1 exon
chr7:131264124-131264174
Coord A exon
chr7:131264975-131265013
Coord C2 exon
chr7:131265819-131266130
Length
39 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCTGTCCATCCTTAGCAT
3' ss Score
8.81
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
CCTCTCTGTCCCAGCCAGCACCATCATTTCCCGTGAGTGATATGATCTCAG
Seq A exon
CATCATTAGTAAGGCAGCCAGAGGTGCACACATCAACAG
Seq C2 exon
GTCTGGACCTGCGACTGATGAATGGGACAAGCAGGTGTGAAGGCCGGGTTGAGGTGTACTATGCCAACACCTGGGGAACTGTGTGTGATGACAACTGGTCCATAGAGGATGCCCACGTGGTCTGCAGACAGCTTGGCTGTGGCCCAGCTTTATCTGCCCTGCCAGGCAGCAGTTTTGGCCCTGGGTCAGGCAGTATCGCCCTTGATGATGTCAACTGCACAGGAAAAGAATCTTCCCTGGCACAATGCCCTCACAGAGATTGGCTCACCCACAACTGTGGACACCAGGAAGATGCTGGTGTCATCTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006204-'45-50,'45-49,46-50
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.010
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053013=SRCR=WD(100=93.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCATCATTTCCCGTGAGT
R:
GTTCCCCAGGTGTTGGCATAG
Band lengths:
113-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types