MmuEX1002433 @ mm10
Exon Skipping
Gene
ENSMUSG00000073821 | 8030451A03Rik
Description
RIKEN cDNA 8030451A03 gene [Source:MGI Symbol;Acc:MGI:1915353]
Coordinates
chr4:64023976-64034155:+
Coord C1 exon
chr4:64023976-64024073
Coord A exon
chr4:64030358-64030456
Coord C2 exon
chr4:64034055-64034155
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTGATCCTCTCTCTTTTCAGTCC
3' ss Score
11.59
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
GTACATACATGGAATATCCTGGACTCGGATAGACAACAATGACTCTACTTTTTCAAATGCGGATGAACTTGTTTCCACATCATTTTGGCAACTCTAAG
Seq A exon
TCCTTACACAATAGAAATGATGCTATACCTGGCCAGGACCTGTCTTTCATAAAAGGGTGAAGCCCCAGGATGGAAGAGCTCAAGCAACTAGAGCCTAGG
Seq C2 exon
GCACAGCTGTGAATCTTAATCTATGAACCAGTATGTGGACACTTCCAAGACATGGAATCTATTGGTGCTTTATTCTTAAGATCAAATTCTCCAGGCAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073821-'12-9,'12-8,13-9
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGACTCGGATAGACAACA
R:
CACTTGCCTGGAGAATTTGATCT
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types