MmuEX1002800 @ mm10

Exon Skipping

Gene

ENSMUSG00000078435 | AU041133

Description

expressed sequence AU041133 [Source:MGI Symbol;Acc:MGI:2143755]

Coordinates

chr10:82150217-82154382:+

Coord C1 exon

chr10:82150217-82150277

Coord A exon

chr10:82150706-82150836

Coord C2 exon

chr10:82154280-82154382

Length

131 bp

Sequences

Splice sites

3' ss Seq

TGTTGTCTCTCCTTTGATAGACA

3' ss Score

7.88

5' ss Seq

AATGTAAGC

5' ss Score

6.12

Exon sequences

Seq C1 exon

GATACAAATTGGAAGACCTGAATAGTGAGGAACACTCTCAGCGCTCTAGAAGATATGGAAG

Seq A exon

ACATAAGATCTGTCACTCTGAATACAAGCCTTGTGAACTTAAGGGATATGGAAAGAAGCAATGTACCTTTGCAGATAAAAGGTTTCTTCAAATATATGGAAGAATCCATACTGAAGGGAAACCCTATGAAT

Seq C2 exon

GTTTACAGAATTGCCAGGGCTACTGGAAAAATTGCAGGTGGATGTTGAAGCACTTTGGAAAGTACAAGCACTGGAAAAAGGAGAACAGAAAGACTCAGTCCAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000078435_CASSETTE2

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref, Alt. Stop)

No structure available

Features

Disorder rate (Iupred):

C1=0.048 A=0.071 C2=NA

Domain overlap (PFAM):

C1:

PF0135222=KRAB=PD(0.1=0.0)

A:

PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF079757=C1_4=WD(100=12.2),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF079757=C1_4=WD(100=11.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0)

C2:

NA

Main Inclusion Isoform:

ENSMUSP00000144661

Main Skipping Isoform:

NA

Other Inclusion Isoforms:

ENSMUSP00000100951

Other Skipping Isoforms:

NA

Associated events

MmuINT0007163

Conservation

Human

(hg38)

chr19:12465705-12465735

Human

(hg19)

No conservation detected

Rat

(rn6)

chr7:10419777-10419907

Cow

(bosTau6)

chr7:14062295-14062362

Chicken

(galGal4)

No conservation detected

Chicken

(galGal3)

No conservation detected

Zebrafish

(danRer10)

chr3:59821815-59821936

Fruitfly

(dm6)

No conservation detected

Primers PCR

Suggestions for RT-PCR validation

F:

TACAAATTGGAAGACCTGAATAGTGA

R:

CTGGACTGAGTCTTTCTGTTCTCC

Band lengths:

162-293

Functional annotations

(Submit an annotation)

There are 0 annotated functions for this event

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]

SPECIAL DATASETS

Ribosome-engaged transcriptomes of neuronal types
Neural differentiation time course
Muscular differentiation time course
Spermatogenesis cell types
Reprogramming of fibroblasts to iPSCs
Hematopoietic precursors and cell types

Special

MmuEX1002800 @ mm10

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]

SPECIAL DATASETS