MmuEX1002860 @ mm10
Exon Skipping
Gene
ENSMUSG00000004668 | Abca13
Description
ATP-binding cassette, sub-family A (ABC1), member 13 [Source:MGI Symbol;Acc:MGI:2388707]
Coordinates
chr11:9403787-9430683:+
Coord C1 exon
chr11:9403787-9403918
Coord A exon
chr11:9408831-9408897
Coord C2 exon
chr11:9430546-9430683
Length
67 bp
Sequences
Splice sites
3' ss Seq
TTCACTTTCTCTTCTATCAGGTT
3' ss Score
10.89
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
GGATCCAGTGGGGTAACATGTACCGCGCTCCAGAGCCAGGGGGCATGACATTTGGCTGGGTGTGCTGGATGATTCTGTTTGATGCAATCCTTTATTTTTTGGGTGGATGGTACTTCAGCAACTTGGTCCCTG
Seq A exon
GTTCAGTATATCTGGTTTATGTTAAGGTATTTGATCTACTTGGACATGAGTTTTGTGCAGGTTGTAG
Seq C2 exon
GAACTTTTGGTTTAGGGAAACCATGGTATTTCCCCTTCACTGCATCATATTGGAAGAGCATATGTGGTCTGATGGAGAGAAGGCGATGTTCTCTGAGTTCTGGTCTGTTCTTCTTCAATGAGGACTTTGGCAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004668-'48-44,'48-43,49-44
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(8.1=82.2)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000042740fB5130
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACATTTGGCTGGGTGTGC
R:
TCGCCTTCTCTCCATCAGACC
Band lengths:
174-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types