MmuEX1002865 @ mm10
Exon Skipping
Gene
ENSMUSG00000051900 | Abca16
Description
ATP-binding cassette, sub-family A (ABC1), member 16 [Source:MGI Symbol;Acc:MGI:2388711]
Coordinates
chr7:120514536-120520207:+
Coord C1 exon
chr7:120514536-120514833
Coord A exon
chr7:120516522-120516730
Coord C2 exon
chr7:120519961-120520207
Length
209 bp
Sequences
Splice sites
3' ss Seq
TGGTCATGGTGTTTGTGCAGGAA
3' ss Score
6.44
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GTTCCACTTTACCGCCAGCAATTCTATTCCCTGTTTATAAAAAGAGCACTATTCATTAGCCGCAACTGGAAGTTCATGCTACTGCAGATAATAGTAGTTATGGTTGTCACTACATACCTCTTATTAGCTCTGCATTTAAATAATAATGATATACCTGAAAGGGAACTGAATTTGAGTCACTATGGTAGAACCATTGTACCTTACTCAACTTCAGGGAATTCTGATTTGGCTCTGAATCTCACAAAGAACCTGAATATTTTTCTAAAGTCAAAAAATCAAAACTTAAGAAAAATAAGAG
Seq A exon
GAATAGAATCCCTGACTACGACAAATTTAAACCAACATAGGACCCAATTCTGTGACTGCTGTTCTTATACAAAGAAGAAGTGGGAACTGGAGAGATGGCTCAGCTGTTAAGAGCTCTTGCTGCTCTTCCAGAGGACCCAAGTTCTTTCTAACCCCTATATCAAGCTACTCAACTGTCTCCAGGGGATCATATGCCATTTTATGGCCACT
Seq C2 exon
GTGATATGAATGATTACATATTAAAAAATAAAGATTGTCACACCTTCTGCCTTGTTGCACTTTCTATTAAAGTTGAGAGAAATAAAACAGTGCTCACTATTTTCTTCAATAATGAAGCATACCACTCACCTGCAATATCTCTGTCAATATTAGACAACATTCTTTTTATGACACTTTCTGGCCCTGATGCTTCCATTACTGTCTTCAATAAGCCGCAACCTCTCCCTCATTACGGTTCGAACATAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051900-'31-30,'31-29,32-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(19.7=77.0)
A:
NO
C2:
PF126982=ABC2_membrane_3=FE(21.0=100)
Main Inclusion Isoform:
ENSMUST00000056042fB5133
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCAACTGGAAGTTCATGCT
R:
AAGTGCAACAAGGCAGAAGGT
Band lengths:
301-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types