MmuEX1003058 @ mm10
Exon Skipping
Gene
ENSMUSG00000033701 | Acbd6
Description
acyl-Coenzyme A binding domain containing 6 [Source:MGI Symbol;Acc:MGI:1919732]
Coordinates
chr1:155564657-155566154:+
Coord C1 exon
chr1:155564657-155564721
Coord A exon
chr1:155564999-155565148
Coord C2 exon
chr1:155566054-155566154
Length
150 bp
Sequences
Splice sites
3' ss Seq
AAGGTTGTTTCCTTGTGTAGCCT
3' ss Score
5.91
5' ss Seq
CAGGTTCGC
5' ss Score
5.28
Exon sequences
Seq C1 exon
GTCAAAGTTGGAAATTGCAATACTCCTAAACCAAATTTCTTTGATTTTGAAGGAAAGCAAAAATG
Seq A exon
CCTCTGGGGACTGCTGCTTCCCACATACAGAAGCATGGTTGCAAGAAAGCCAGAGAAAAGGAGAAGAACAAGATGAATCCCCAACTCAAGACTTTCCTATGCCTCTGCCTTTGCAGTGGGAAAATATAAAAAATCCAAAACTAGACCCAG
Seq C2 exon
GGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAGTTCACCTTATAGACCAGGCTACCCTTAAACTCAGAGATCTGCCTGCTTCTGCCTCCCGAGTGCAGGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033701-'4-3,'4-2,5-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.400 C2=NA
Domain overlap (PFAM):
C1:
PF0088714=ACBP=FE(24.7=100)
A:
PF0088714=ACBP=PD(3.5=7.7)
C2:
NA
Main Inclusion Isoform:
ENSMUST00000035560fB5259
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAAAGTTGGAAATTGCAATACTCC
R:
CTGCACTCGGGAGGCAGAAG
Band lengths:
162-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types