Special

MmuEX1003657 @ mm10

Exon Skipping

Gene
Description
activated leukocyte cell adhesion molecule [Source:MGI Symbol;Acc:MGI:1313266]
Coordinates
chr16:52248142-52253236:-
Coord C1 exon
chr16:52253125-52253236
Coord A exon
chr16:52251558-52251646
Coord C2 exon
chr16:52248142-52250375
Length
89 bp
Sequences
Splice sites
3' ss Seq
ATGTCTTTTCATCATTTCAGAGG
3' ss Score
9.25
5' ss Seq
CAAGTATAA
5' ss Score
-0.82
Exon sequences
Seq C1 exon
AACTGCATCAAAACATGTAAACAAGGACCTTGGTAATATGGAGGAAAATAAAAAGCTGGAAGAAAACAATCACAAAACAGAAGCCTAAGAGAGGAGCGGATTGGATAGCCTG
Seq A exon
AGGAAAAAAACATATAAGCAAATTGAAGCATGAACGTGGATTGTATTTAAGACATATACAAAGACAAATGACAGCAATTCATGGTTCAA
Seq C2 exon
GTGGAGGCTTCGTTTCTGGGATCCCACTGCACCGCCATTTCTTCCCAGATTTATGTGTATAACTTAAACTGGAAAAAAAGAAAAAGAAAAATATGACTATTAGATTTCCAGGTATAGAACTGTGTTCTTTGAGAGGGAAAAGAAATATGGTGTTTCCTTTTAGACACAAACAATAAAATTATTTTGAAGGCAATGAGAAACTAATCAAAGACTAATCTCTGTTGGAGGTTGGGAATAATGTTTTGCCACTTCTGCAGACTGAGAGACGTGTCATTGGACATGTGTAACCATTTGATATCTGAGCAATAGTGTCTCAGTTTAATAAAAGCTTCCTATAGTACATTGGTATGGATTAAATACATAAAATATTCTATTAGACTTCATGCTGTAAAGAGAACATGTTATTTTGCCTCTAAACTTTGATTTATTGAAGTTTTATTTGGCAAGAAAAAAGAAATTGAATCTTGATCAATATTTAAACCAAAGGGAAAAGGGAAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022636_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

3' UTR

No structure available
Features
Disorder rate (Iupred):
  C1=0.828 A=NA C2=NA
Domain overlap (PFAM):

C1:
PF142831=DUF4366=PD(25.2=93.3)
A:
NA
C2:
NA


Main Inclusion Isoform:
NA


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGGAGCGGATTGGATAGC
R:
TCTTTTCCCTCTCAAAGAACACAGT
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types