MmuEX1003792 @ mm10
Exon Skipping
Gene
ENSMUSG00000027460 | Angpt4
Description
angiopoietin 4 [Source:MGI Symbol;Acc:MGI:1336887]
Coordinates
chr2:151943304-151945337:+
Coord C1 exon
chr2:151943304-151943434
Coord A exon
chr2:151943855-151943980
Coord C2 exon
chr2:151944494-151945337
Length
126 bp
Sequences
Splice sites
3' ss Seq
AGGATTCTCCTACTCCCCAGGCC
3' ss Score
6.4
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
Exon sequences
Seq C1 exon
CCTCTCTGTGAATGACAGCAGCAGTTCAGCAGGGCGCAAGAACAGCCTGGCTCCTCAGGGCACCAAGTTCAGCACCAAAGACATGGACAATGATAACTGCATGTGTAAATGTGCTCAGATGCTGTCTGGAG
Seq A exon
GCCAGGAAGAAACATCATGAGAGAGACCAGAAGCAGGGAGGGCAGCTCCCCTGCCCACCTCTCTGTCAGGCGATACTCCTGGCAGGGAAAAGACCAGAGGCTGAAGATGGAATGGGAGCAGCACTG
Seq C2 exon
GGTGGTGGTTTGATGCCTGTGGCCTCTCCAACCTCAATGGCATCTACTATTCAGTTCATCAGCACTTGCACAAGATCAATGGCATCCGCTGGCACTACTTCCGAGGCCCCAGCTACTCACTGCACGGCACACGCATGATGCTGAGGCCAATGGGTGCCTGACACACAGCCCTGCAGAGACTGATGCCGTAGGAGGATTCTCAACCCAGGTGACTCTGTGCACGCTGGGCCCTGCCCAGAAATCAGTGCCCAGGGCTCATCTTGACATTCTGGAACATCGGAGCCAGCTTACCTTGCCCCTGAATTACAAGAGTCACCTGCCTCCCTGTGCCCCTCTAGTGTGAAATGCTGGGTGCTTGAGGCACCTGCCTCTGTGGAACCCATACTCTTTCCCCTCCTGCTGCATGCCGGGACTCCCTGCCATGACCTGAGGCAGACTGAACTTGACCCCCTCAGAGGGTGGGGTTGCAGCAGGTGGGGAAATCTTGCAGCCTGGGGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027460-'8-8,'8-7,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.433 A=0.667 C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(20.5=100)
A:
PF0014713=Fibrinogen_C=PD(0.6=14.3)
C2:
PF0014713=Fibrinogen_C=PD(23.3=92.6)
Main Inclusion Isoform:
ENSMUST00000028955fB5771
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCACCAAAGACATGGACA
R:
CCTCCTACGGCATCAGTCTCT
Band lengths:
258-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types