MmuEX1003794 @ mm10
Exon Skipping
Gene
ENSMUSG00000038742 | Angptl6
Description
angiopoietin-like 6 [Source:MGI Symbol;Acc:MGI:1917976]
Coordinates
chr9:20876392-20878603:-
Coord C1 exon
chr9:20878049-20878603
Coord A exon
chr9:20877287-20877320
Coord C2 exon
chr9:20876392-20876569
Length
34 bp
Sequences
Splice sites
3' ss Seq
ATTCTCATGTTCTGCCTCAGCGC
3' ss Score
6.88
5' ss Seq
CAGGTTGGC
5' ss Score
5.52
Exon sequences
Seq C1 exon
GCGCTTGGAGGGCGCTCGGAGGTGCCGCGCGTTGCCGCGTCACCCTAGTTTTGTCCCCGCAGAAGGCAACTAGCGCCGTCTGCAGGAGCTCAGAAGCCACCCAAGACAGCGAACTGGCCACGCTGCGCATGCGCCTGGGTCGCCACGAGGAGCTGCTGCGCGCGCTGCAAAGGCGTGCGGCGGAGGGTGGTGCGCTCGCGGACGAGGTGCGCGCACTGCGCGAGCACAGTCTCACCCTGAACACGCGCCTGGGCCAGCTGCGCGCGCAATTGCAGCAGGAGGCGAGGGCGGAGCCTGACCTGGGGGCGGAGCCTGCTGCTGCACTTGGTTTGCTAGCCGAGCGCGCGCTGGACGCTGAGGCCGAAGCGCGCCGGACGACGGCACGCCTGCAGCAGCTGGACGCACAGCTCCGTGAGCATGCGCAGCTCATGAGCCAGCATAGCAGCCTCCTCGGCCGCCTGCAACGCGCGTGCGCGGGCCCGGAACGGGGACAGCAGCAG
Seq A exon
CGCAAATGACAGACATGGGACAACAAACAGCCAG
Seq C2 exon
GTCCTGCCACTGCCCCTGGCGCCTCTGGTGCCTCTGAGCCTCGTGGGCAGTGCCAGCAACACCAGCAGGAGGCTGGACCAAACTCCAGAGCACCAGAGAGAGCAGAGCTTGAGACAGCAGGGGCCTCCATCTTCTCTGCTGCCCACAGGGCACCTTGCTGTCCCCACAAGGCCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038742_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.354 A=1.000 C2=0.733
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000043726fB5773
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATGAGCCAGCATAGCAGC
R:
GAGGCTCAGAGGCACCAGAG
Band lengths:
117-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types